Factsheet for Bra030065.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15702	Canola	nucleus	100.0	100.0
AT1G27880.1	Thale cress	nucleus	79.63	84.96
VIT_01s0010g02590.t01	Wine grape	mitochondrion	47.43	67.01
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	29.01	57.91
KRH42637	Soybean	nucleus	51.75	55.64
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	11.01	52.97
Os04t0486800-01	Rice	nucleus	47.84	50.22
Solyc05g014690.1.1	Tomato	nucleus	51.54	50.0
TraesCS2B01G363700.1	Wheat	nucleus	47.33	49.57
OQU81827	Sorghum	cytosol, extracellular	9.05	49.16
TraesCS2A01G345300.1	Wheat	nucleus	47.02	49.03
TraesCS2D01G344000.2	Wheat	nucleus	47.33	48.99
Zm00001d025722_P002	Maize	nucleus	45.99	48.17
EES12342	Sorghum	plastid	46.71	47.0
HORVU2Hr1G084110.2	Barley	plastid	45.58	46.68
Bra039413.1-P	Field mustard	nucleus	14.51	23.11
Bra010520.1-P	Field mustard	nucleus	15.95	21.62
Bra038422.1-P	Field mustard	nucleus	15.43	21.28
Bra009948.1-P	Field mustard	nucleus	14.71	15.53
Bra031741.1-P	Field mustard	nucleus	18.42	15.4
Bra027115.1-P	Field mustard	nucleus	18.31	15.36
Bra018418.1-P	Field mustard	nucleus	18.31	14.88

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra030065	EnsemblPlants:Bra030065.1	EnsemblPlants:Bra030065.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310
GO:GO:0006950	GO:GO:0007154	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009628	GO:GO:0009987	GO:GO:0009991	GO:GO:0016787	GO:GO:0042631	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4EMP5	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF108
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0002541138	SEG:seg

Description

AT1G27880 (E=0.0) | ATP-dependent DNA helicase, putative

Coordinates

chrA07:-:6839660..6846435

Molecular Weight (calculated)

107559.0 Da

IEP (calculated)

8.839

GRAVY (calculated)

-0.287

Length

972 amino acids

Sequence
(BLAST)

001: MNFRGNSEDH KFVEKFLGIL SSKYFDGFSD GQSSEVLTKY SSEISSGISE ERSPRKIPRK TSLGRRLIPR KCSSEIPEDS DGSHISATPP RDPFPSPPPK
101: QVPPVSRKAP SSSSSSRSKP KAHTHPQAPD HSEEAPVPSS YPPPPSLFTD LPFRICEPSN RSQPAGSSSS VSSFYRLPRA NTSESESQSS SVNHVLPELP
201: HVPVVRRKPP NLITDSITSQ PVKAPVVFRS GGEGNFVKLN LNGKRGKKFP SKYKSASKSR SKFAYRGKRY KKSEANGEEE EGETWLDEES DLQRDNGFIS
301: SVEEAVLAVK AEASDENLTK LLSLVYGYES FRDGQLQAIK MVLSGSSTML VLPTGAGKSL CYQIPAMILP GITLVVSPLV SLMIDQLKHL PSVIKGGLLS
401: SSQRPEEATE TLRKLKEGII KVLFVSPERL LNVEFLSMFR MSLSVSLVVV DEAHCVSEWS HNFRPSYMRL KASMLYSALT ADCILAMTAT ATTMTLQAVM
501: SALEIPSTNL IQKSQLRENF ELSVSLSGAN RLKDLLILME SQPYKKIRSI IVYCKFQYET DMISKYLRDN NITAKGYHSG LPAKDRVRIQ ESFCSNKIRV
601: VVATVAFGMG LDKGDVGAVI HFSVPGSLEE YVQEIGRAGR DGRLSYCHLF YDEDTYLKLR SLSHSDGVDE YAVGKFLTHV FSSDTKQHEK ICSIVIESAS
701: HKFDMKEEVM QTILTHLELG EVQYLRMLPQ VNVCCTLNFH KSSPNILAAR NIIVAAILKK SHVKQGLYVF DIPTVASSTG VAATDVLAEI QTLKMKGEVT
801: YETKDPAFCY TILESPKDTS SLSSHLTKWL AEVESCKVRK LDIMSSAAMA AINVSNTSET SSGAKQTLSL QSRILDYFNG DENCDVPSKT TQNCSFLRAD
901: IKVFLQSNRQ AKFTPRAIAR IMHGVGSPAF PNSIWSKTHF WGRYMSVDFR AIMEAAQTEL MNFVDRNAAL AS

Best Arabidopsis Sequence Match ( AT1G27880.1 )
(BLAST)

001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T

Arabidopsis Description

RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.