Factsheet for Bra009948.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80633	Canola	nucleus	37.89	94.32
AT5G27680.2	Thale cress	nucleus	74.7	80.19
KRG92892	Soybean	nucleus	48.86	52.69
Solyc01g099460.1.1	Tomato	nucleus	46.15	50.0
TraesCS1B01G119200.1	Wheat	nucleus	44.63	48.58
HORVU1Hr1G021560.16	Barley	nucleus	44.41	48.35
TraesCS1D01G100000.1	Wheat	nucleus	44.19	48.11
GSMUA_Achr8P06700_001	Banana	nucleus	41.59	47.88
EES19033	Sorghum	nucleus	44.63	47.57
TraesCS1A01G091400.2	Wheat	nucleus	44.41	47.12
Zm00001d010866_P004	Maize	nucleus	44.19	46.89
Os05t0150600-02	Rice	nucleus	42.13	45.97
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	21.61	36.78
Bra039413.1-P	Field mustard	nucleus	17.16	25.9
Bra038422.1-P	Field mustard	nucleus	18.46	24.11
Bra010520.1-P	Field mustard	nucleus	16.94	21.76
Bra031741.1-P	Field mustard	nucleus	19.0	15.06
Bra030065.1-P	Field mustard	nucleus	15.53	14.71
Bra027115.1-P	Field mustard	nucleus	18.35	14.58
Bra018418.1-P	Field mustard	nucleus	18.68	14.38

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra009948	EnsemblPlants:Bra009948.1	EnsemblPlants:Bra009948.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006310
GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	GO:GO:0043138	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR015940	InterPro:IPR036388	UniProt:M4D0F0	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF16124	PFscan:PS50030	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710
PANTHER:PTHR13710:SF69	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614
InterPro:UBA	UniParc:UPI000253F4A7	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

AT5G27680 (E=9e-168) RECQSIM | RECQSIM (Arabidopsis RecQ helicase sim); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding

Coordinates

chrA06:+:18253646..18258256

Molecular Weight (calculated)

103715.0 Da

IEP (calculated)

8.357

GRAVY (calculated)

-0.447

Length

921 amino acids

Sequence
(BLAST)

001: MKLVEMGFAK LDALEAVKAV GKSCGDAVEY LLKRTGGFSS ASSLCSAKNN SNKTLGKRSL PSSFASGSMR QSSLLDHFGS VDKNKKKCVS FGTAVVSDPS
101: EEMRKSPPLV FTESSGCSEG SSTWEISVNS ILRNRFGISS LKSFQREALS TWVAHKDCLV LAATGSGKSL CFQIPALLTG KVVVVISPLI SLMHDQCLKL
201: STHKVSACFL GSGQLDNRIE QKAMQGMYQI IYVCPETVIR LIKPLQKLAK THGIALFAID EAHCVSKWGH DFRPDYRKLS MLRENFCASS LAFLEYDVPI
301: MALTATATAH VQEDILDSLH LSKETKTVLT SFFRPNLQFS VKHSRTKSAA SYAKDFQNLI DLYSGKRKAT GKKLAVISQG SEGQSDFGYH DAENIHETDN
401: DDDDEEDPEN SVAKQNSSNG KEMSEEYLED ETDIFQSVDD WDVACGEFCA MSPCDVLDIP DPSGKQTPDE SGHNHSNKAK NLEGPTIIYV PTRKESVNVA
501: KYLSGIGLKA AAYNAKLPKK HLRQVHQEFH EDKLQVVVAT IAFGMGIDKK NVRKIIHYGW PQSLEAYYQE AGRAGRDGEL AECVLYANLS RVPTLLPSRR
601: SKEQTEQAYK MLSDCFRYGM NTSQCRAKIL VEYFGEDFTS KKCNLCDVCT KGPPEQVNVR EEANLLFQVI SAFHAENSSE HASCQDYGLG NSKQKKLSDK
701: PNLFFFINRI REQSKKFMEI DRLWWKGLAR IMEAEGYIKE MDNKSRRVEI AFIEPTEKGR KQLALEDDKP LYVYPEADML VSLRQRRTYS GFSSWGKGWA
801: DPEIRRQRLE TMKRPRERKP RRERSRQQQR SFFFAFTPIF RQRRRAIEKL KLVNEALVAA EENVARLQER HDVILKEICS YYLVNSELQE ALVAARADID
901: VASGFVIELR RLQLNILNSL S

Best Arabidopsis Sequence Match ( AT5G27680.2 )
(BLAST)

001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE

Arabidopsis Description

RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.