CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G27680.2	Thale cress	nucleus	53.98	53.73
GSMUA_Achr8P06700_001	Banana	nucleus	48.83	52.12
Solyc01g099460.1.1	Tomato	nucleus	51.52	51.76
HORVU1Hr1G021560.16	Barley	nucleus	51.17	51.65
TraesCS1D01G100000.1	Wheat	nucleus	51.05	51.54
TraesCS1B01G119200.1	Wheat	nucleus	50.82	51.3
EES19033	Sorghum	nucleus	51.41	50.81
TraesCS1A01G091400.2	Wheat	nucleus	50.7	49.88
Os05t0150600-02	Rice	nucleus	49.06	49.64
Zm00001d010866_P004	Maize	nucleus	50.23	49.42
Bra009948.1-P	Field mustard	nucleus	52.69	48.86
CDX80633	Canola	nucleus	18.15	41.89
CDX80627	Canola	nucleus	18.15	41.67
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	25.53	40.3
CDX80626	Canola	golgi, mitochondrion	35.48	40.24
KRH00028	Soybean	cytosol	2.93	33.33
KRH42322	Soybean	cytosol, nucleus, plastid	4.68	26.49
KRH33841	Soybean	nucleus	17.92	25.08
KRH39703	Soybean	nucleus	19.09	23.45
KRH42323	Soybean	cytosol	8.08	21.43
KRH37506	Soybean	nucleus	18.15	20.83
KRH30702	Soybean	nucleus	20.61	20.21
KRG98073	Soybean	nucleus	21.08	19.57
KRH42637	Soybean	nucleus	17.1	16.15
KRH26366	Soybean	nucleus	20.14	14.93
KRH44073	Soybean	nucleus	19.91	14.66
KRH58739	Soybean	cytosol	1.87	9.2

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100793222	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02012770	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA_helicase_ATP-dep_RecQ	EnsemblPlantsGene:GLYMA_20G236000	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR015940	InterPro:IPR036388
UniProt:K7N5A0	ProteinID:KRG92889.1	ProteinID:KRG92890.1	ProteinID:KRG92891.1	EnsemblPlants:KRG92892	ProteinID:KRG92892
ProteinID:KRG92892.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	PFscan:PS50030
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF69	InterPro:RecQ_Zn-bd	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	InterPro:UBA	UniParc:UPI000233DE01	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:46828990..46835999

Molecular Weight (calculated)

96990.2 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.456

Length

854 amino acids

Sequence
(BLAST)

001: MDGNKTSSAQ VIAEMIGMGF DYTDIMEAIK VAGPSIPSAV EHILNSTART PKLHAHNGRK KTVLRKQPFR SCRQVRQSKI FDHFHSNDAK EESPQMGVDP
101: NPIVLSEPFE AQDLDIAYDW EQRVSLLMQK HFGFSSLKTF QKEALSAWLA HKDCLVLAAT GSGKSLCFQI PALLSGKVVV VISPLISLMH DQCLKLTRHG
201: ISACFLGSGQ PDDTVEQKAM GGLYSIVYIC PETVLRLIEP LQKLAESHGI ALFAIDEVHC VSKWGHDFRP DYRRLSVLRE NFSASKLKSL KFDIPLMALT
301: ATATKRVRED ILKSLHMSKE TNVVLTSFFR SNLRFMVKHS RTSQASYAKD FHELIQVYGR KQNMTGNEKY FISDDSDHVS NSSDASSISD TDSVSPDDNQ
401: DDYAYKDINI MHSGNTDDFL TGRELSVDFL ENDVDAFQSV DNSDVTCGEF CVQPAHKEWE LSETIDPPKK PEGRLKFLKK PLEQGPAIIY VPTRKETLRI
501: AKYLCKFGVK AAAYNAGLPK LHLRRVHEEF HENTLEVIVA TIAFGMGIDK SNVRRIIHYG WPQSLETYYQ EAGRAGRDGK LADCILYANL ANKPSLLPSR
601: KSEDQMKQAY IMLSDCFRYG MNTSCCRAKI LVEYFGEDFS HQKCLLCDVC IDGPPQRQNV KEEACILLQT IGAHNECNNY LDCSYDDDIH FHSKHRGLRE
701: RPNLQILVGK IRQQFQKFLT TDILWWRGLA RILEVKGYIG EGDDKTHVQA KYLEPTELGL EFVKSMSEQD FYVYPEADML LARKTNKPFS SFSEWGKGWA
801: DPEIRRERLE RMRVNRKPGM LPSPKKQRKR KARKGWAGLR TSRGRLAAKL SKHK

Best Arabidopsis Sequence Match ( AT5G27680.2 )
(BLAST)

001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE

Arabidopsis Description

RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.