Factsheet for Solyc02g088430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular, vacuole

Predictor Summary:

nucleus 2
plastid 2
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plastid, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099460.1.1	Tomato	nucleus	44.18	28.12
KRG92892	Soybean	nucleus	40.3	25.53
CDX80633	Canola	nucleus	16.45	24.05
CDX80627	Canola	nucleus	16.45	23.92
Zm00001d010866_P004	Maize	nucleus	36.04	22.47
TraesCS1D01G100000.1	Wheat	nucleus	35.12	22.46
HORVU1Hr1G021560.16	Barley	nucleus	35.12	22.46
TraesCS1B01G119200.1	Wheat	nucleus	35.12	22.46
EES19033	Sorghum	nucleus	35.86	22.45
TraesCS1A01G091400.2	Wheat	nucleus	35.49	22.12
AT5G27680.2	Thale cress	nucleus	34.94	22.03
Bra009948.1-P	Field mustard	nucleus	36.78	21.61
Os05t0150600-02	Rice	nucleus	33.46	21.45
GSMUA_Achr8P06700_001	Banana	nucleus	29.21	19.75
Solyc09g018710.2.1	Tomato	cytosol	14.42	19.02
CDX80626	Canola	golgi, mitochondrion	20.89	15.01
Solyc08g074610.1.1	Tomato	nucleus	13.12	12.91
Solyc01g100280.2.1	Tomato	nucleus	15.71	12.07
Solyc07g042010.2.1	Tomato	nucleus	14.05	11.09
Solyc05g014690.1.1	Tomato	nucleus	16.08	8.68
Solyc09g018690.2.1	Tomato	nucleus	6.28	6.71
Solyc01g103960.2.1	Tomato	nucleus	14.6	6.69

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0032508	GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR036388	UniProt:K4BBZ8
InterPro:P-loop_NTPase	PFscan:PS51192	PANTHER:PTHR13710	PANTHER:PTHR13710:SF69	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc02g088430.1
EnsemblPlants:Solyc02g088430.1.1	UniParc:UPI00027686C8	InterPro:WH-like_DNA-bd_sf	:	:	:

Description

No Description!

Coordinates

chr2:+:50519539..50528097

Molecular Weight (calculated)

61637.5 Da

IEP (calculated)

6.945

GRAVY (calculated)

0.144

Length

541 amino acids

Sequence
(BLAST)

001: MSCYLLFCGF TSTRIAKNLL QKHFGLSLLK DFQEEALEGN LCFQSPALLT GNVVIVISLL ISLMHDQCLK LTKHGVSACF LGSCQTDQSV EQKAMAGIYS
101: IIYVCPETIL SHGIALVAVH EVHCVSKWGH DFPPNYRFIF FCFLINLLKL VKDSALMDTM KFLKFDIPIM ALTATATTHV REYILRSLHM SKFCMQTCQR
201: TPTLLPSQRS EEQTKQAYKY GMYTSCYRAK LLVEYFDEHL LLKIYLVDVK THWLLCFFLC SLHVKDVCLC FSVDFLPRFF SGCDICIKGP PERQNLEAEA
301: MIILQVVATH CRNFADISYG GYEGRLGESP NIKALVGKIR EQVYFFWEGR VVEIIYPEVT ECGRQFLSSE TQQPFHVYPE VDMLLSMTSP KSFSSFAEWE
401: KGGLIPRFVA NTGKESELEI SKKTKIAKTV VEYFGEQFLL EKFLVCSICI KGPPGRQSLK AEAMIFLQSC CCSLCRNFAD TSYGGYEGRL DEWPNIKALV
501: SRIMEQIPSL WYGASEVYVV PCLEREALKV YLGLEIYDLK E

Best Arabidopsis Sequence Match ( AT5G27680.6 )
(BLAST)

001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQS LEAYYQEAGR AGRDGELAEC VLYADLSRAP TLLPSRRSKE QTEQAYKMLS
601: DCFRYGMNTS QCRAKILVEY FGEEFSSKKC NSCDVCTEGP PELVDVREEA NLLFQVITAF HLQVDNDSEH APYEDYGLGN SKQNKLSHKP NLLFFISKLR
701: EQCEKFKETD CLWWKGLARI MEAEGYIKEM DNKDRRVEIK FIQPTEKGKK QLDFQDDKPL YVYPEADMLL SLKQDRTYSG FSEWGKGWAD PEIRRQRLER
801: RERKPRRERK PRKKRTRGRS STKLHPWRSK E

Arabidopsis Description

RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.