Factsheet for Solyc01g100280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007294	Potato	nucleus	53.55	82.86
GSMUA_AchrUn_...	Banana	nucleus	44.32	74.29
KRH33841	Soybean	nucleus	61.36	70.82
VIT_14s0060g01440.t01	Wine grape	nucleus	60.51	68.16
AT3G05740.1	Thale cress	nucleus	58.24	67.66
CDY66905	Canola	nucleus	56.82	65.68
CDY27743	Canola	nucleus	56.53	65.35
Bra039413.1-P	Field mustard	nucleus	53.98	62.3
Os11t0672700-01	Rice	nucleus	50.28	60.2
TraesCS4D01G144400.2	Wheat	nucleus	51.14	57.97
TraesCS4A01G170100.1	Wheat	nucleus	50.85	57.65
EES10228	Sorghum	nucleus	50.71	57.21
HORVU4Hr1G032190.1	Barley	nucleus	51.14	56.16
TraesCS4B01G126600.1	Wheat	nucleus	49.01	56.1
Zm00001d048672_P001	Maize	nucleus	49.72	55.56
Solyc09g018710.2.1	Tomato	cytosol	21.16	36.34
Solyc08g074610.1.1	Tomato	nucleus	27.41	35.09
Solyc07g042010.2.1	Tomato	nucleus	22.16	22.77
Solyc01g099460.1.1	Tomato	nucleus	23.86	19.76
Solyc01g103960.2.1	Tomato	nucleus	31.96	19.07
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	12.07	15.71
Solyc05g014690.1.1	Tomato	nucleus	21.16	14.87
CDY27742	Canola	mitochondrion	0.43	12.0
Solyc09g018690.2.1	Tomato	nucleus	1.7	2.37

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0007154
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	GO:GO:0009991	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0042631
GO:GO:0043140	GO:GO:0070417	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:K4B162	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g100280.2	EnsemblPlants:Solyc01g100280.2.1	TIGRFAMs:TIGR00614	UniParc:UPI0002767510	SEG:seg

Description

ATP-dependent DNA helicase Q-like 1 [Source:Projected from Arabidopsis thaliana (AT3G05740) UniProtKB/Swiss-Prot;Acc:Q9FT74]

Coordinates

chr1:+:90352624..90358296

Molecular Weight (calculated)

79399.3 Da

IEP (calculated)

7.051

GRAVY (calculated)

-0.406

Length

704 amino acids

Sequence
(BLAST)

001: MDFKGLGLGH SITDAPSPTQ ERRRLSKTSG IKLRNTIFVV RKEVLKLILK SQMKAREKQR RPPLRRPRKA EIEDAEEMQD EDLELEKVRL ISLALECGFD
101: EDSAKTCLNR LVELYGDDGR DFINVELCGD EFLALLAESM QDTEDWDDLQ AIESEACGAL ADMLGKDTRE DCEVDCDEDS GAYVHVIEDS PQQQRHAKTV
201: LLDSSSESEE MGIRFASKED LPSTSKIRRD RIHQGMTPQS GCRASTLMDY MSVFTEGSYS SVSPEMECPL ESSHGDRTLS YEELQRLDDI ELANVVVFGN
301: RSFRPLQHQA CQAFLQKRDC FVLMPTGGGK SLCYQLSAIV QPGVMIVISP LLSLIQDQII TLNLKFGIPA TFLNSQQTQS QTAAVLRELR KDVPSCKLLY
401: VTPERIAGNL SFQETLECMH RKGQLAGFVI DEAHCVSQWG HDFRPDYRVL GCLKQNFPVV PVMALTATAT HAVRQDILSA LRIPRALVLE TSFDRSNLKY
501: EVTGKSKEPL KQLGNLVRDR FKNLSGIVYC LSKSECVDVS KFLNEKCKIK TAYYHAGLAS RQRVAVQKRW RSGEVDIVCA TIAFGMGIDK PDVRFVVHNT
601: MSKSIESYYQ EAGRAGRDGL PATCVILYQK KDFSRVVCML RSGQGYKKES LKRAMEQARK MQKYCELKNE CRRKLLLEHF GESFDQYSCK NGSNPCDNCL
701: KSSS

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.