Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27743 | Canola | nucleus | 91.09 | 90.64 |
| CDY66905 | Canola | nucleus | 90.92 | 90.48 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.33 | 72.62 |
| KRH42322 | Soybean | cytosol, nucleus, plastid | 17.0 | 68.21 |
| VIT_14s0060g01440.t01 | Wine grape | nucleus | 66.67 | 64.64 |
| PGSC0003DMT400007294 | Potato | nucleus | 47.19 | 62.86 |
| Os11t0672700-01 | Rice | nucleus | 59.74 | 61.56 |
| Solyc01g100280.2.1 | Tomato | nucleus | 67.66 | 58.24 |
| EES10228 | Sorghum | nucleus | 58.91 | 57.21 |
| TraesCS4D01G144400.2 | Wheat | nucleus | 58.58 | 57.17 |
| TraesCS4A01G170100.1 | Wheat | nucleus | 58.09 | 56.68 |
| Zm00001d048672_P001 | Maize | nucleus | 58.58 | 56.35 |
| TraesCS4B01G126600.1 | Wheat | nucleus | 56.11 | 55.28 |
| HORVU4Hr1G032190.1 | Barley | nucleus | 57.59 | 54.45 |
| KRH42323 | Soybean | cytosol | 18.81 | 35.4 |
| AT1G31360.3 | Thale cress | nucleus | 29.7 | 24.36 |
| AT4G35740.1 | Thale cress | nucleus | 28.22 | 23.98 |
| AT5G27680.2 | Thale cress | nucleus | 27.56 | 19.46 |
| AT1G10930.1 | Thale cress | nucleus | 37.29 | 19.02 |
| AT1G27880.1 | Thale cress | nucleus | 24.59 | 16.36 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:819743 | ProteinID:AAF26076.1 | ProteinID:AEE74288.1 | EMBL:AJ404470 |
| ArrayExpress:AT3G05740 | EnsemblPlantsGene:AT3G05740 | RefSeq:AT3G05740 | TAIR:AT3G05740 | RefSeq:AT3G05740-TAIR-G | EnsemblPlants:AT3G05740.1 |
| TAIR:AT3G05740.1 | Unigene:At.10170 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 | GO:GO:0000724 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006310 | GO:GO:0006950 | GO:GO:0007154 |
| GO:GO:0008026 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009378 | GO:GO:0009605 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0009991 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | GO:GO:0042631 |
| GO:GO:0043140 | GO:GO:0046872 | GO:GO:0070417 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | RefSeq:NP_187225.2 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF16124 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR13710 | PANTHER:PTHR13710:SF107 | UniProt:Q9FT74 | Symbol:RECQI1 | InterPro:RecQ_Zn-bd | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 | UniParc:UPI00000A4297 | SEG:seg | : |
Description
RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
Coordinates
chr3:+:1698079..1701467
Molecular Weight (calculated)
68504.7 Da
IEP (calculated)
5.150
GRAVY (calculated)
-0.411
Length
606 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.