Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41637 | Canola | nucleus | 42.64 | 91.02 |
| Bra010520.1-P | Field mustard | nucleus | 87.1 | 86.61 |
| CDY64039 | Canola | nucleus | 87.1 | 86.61 |
| Os02t0780800-01 | Rice | cytosol | 31.84 | 70.5 |
| VIT_11s0016g00850.t01 | Wine grape | nucleus | 62.97 | 62.27 |
| KRH37506 | Soybean | nucleus | 62.69 | 60.08 |
| Solyc07g042010.2.1 | Tomato | nucleus | 57.36 | 59.71 |
| KXG31219 | Sorghum | nucleus | 55.68 | 52.79 |
| GSMUA_Achr3P10310_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 56.66 | 52.26 |
| TraesCS6B01G371000.2 | Wheat | nucleus | 54.98 | 51.51 |
| Zm00001d018287_P001 | Maize | nucleus | 53.16 | 51.42 |
| TraesCS6A01G339900.1 | Wheat | nucleus | 54.56 | 51.05 |
| TraesCS6D01G320500.1 | Wheat | nucleus | 54.84 | 50.52 |
| AT3G05740.1 | Thale cress | nucleus | 23.98 | 28.22 |
| AT1G31360.3 | Thale cress | nucleus | 25.81 | 24.9 |
| AT5G27680.2 | Thale cress | nucleus | 23.0 | 19.11 |
| AT1G27880.1 | Thale cress | nucleus | 21.6 | 16.9 |
| AT1G10930.1 | Thale cress | nucleus | 27.63 | 16.58 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:829727 | ProteinID:AEE86556.1 | ProteinID:AEE86557.1 | EMBL:AJ404472 |
| EMBL:AK229155 | ArrayExpress:AT4G35740 | EnsemblPlantsGene:AT4G35740 | RefSeq:AT4G35740 | TAIR:AT4G35740 | RefSeq:AT4G35740-TAIR-G |
| EnsemblPlants:AT4G35740.1 | TAIR:AT4G35740.1 | Unigene:At.20216 | ProteinID:CAA20044.1 | ProteinID:CAB81483.1 | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 | GO:GO:0000724 | GO:GO:0000733 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006310 | GO:GO:0006950 | GO:GO:0008026 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009378 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 |
| GO:GO:0036310 | GO:GO:0043138 | GO:GO:0043140 | GO:GO:0046872 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | RefSeq:NP_195299.2 | RefSeq:NP_849500.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF16124 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF105 | UniProt:Q9FT72 |
| InterPro:RecQ_Zn-bd | Symbol:RecQl3 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 |
| UniParc:UPI00000AB7D7 | SEG:seg | : | : | : | : |
Description
RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
Coordinates
chr4:+:16935988..16940372
Molecular Weight (calculated)
79948.5 Da
IEP (calculated)
8.189
GRAVY (calculated)
-0.462
Length
713 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.