Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G339900.1 | Wheat | nucleus | 95.74 | 97.24 |
| TraesCS6B01G371000.2 | Wheat | nucleus | 93.54 | 95.14 |
| Os02t0780800-01 | Rice | cytosol | 36.95 | 88.82 |
| KXG31219 | Sorghum | nucleus | 75.06 | 77.26 |
| Zm00001d018287_P001 | Maize | nucleus | 70.41 | 73.95 |
| CDY41637 | Canola | nucleus | 29.33 | 67.96 |
| VIT_11s0016g00850.t01 | Wine grape | nucleus | 53.62 | 57.56 |
| GSMUA_Achr3P10310_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 55.17 | 55.24 |
| AT4G35740.1 | Thale cress | nucleus | 50.52 | 54.84 |
| KRH37506 | Soybean | nucleus | 52.58 | 54.7 |
| Bra010520.1-P | Field mustard | nucleus | 50.52 | 54.53 |
| CDY64039 | Canola | nucleus | 50.52 | 54.53 |
| Solyc07g042010.2.1 | Tomato | nucleus | 46.9 | 52.99 |
| TraesCS4D01G144400.2 | Wheat | nucleus | 23.13 | 28.82 |
| TraesCS4D01G133500.1 | Wheat | nucleus | 23.9 | 26.32 |
| TraesCS2D01G102800.1 | Wheat | nucleus | 24.68 | 21.39 |
| TraesCS1D01G100000.1 | Wheat | nucleus | 21.58 | 19.74 |
| TraesCS2D01G303500.1 | Wheat | nucleus | 25.58 | 16.49 |
| TraesCS2D01G344000.2 | Wheat | nucleus | 18.99 | 15.65 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006310 | GO:GO:0008026 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009378 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016787 | GO:GO:0036310 | GO:GO:0043138 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF16124 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF105 | InterPro:RecQ_Zn-bd | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 | EnsemblPlantsGene:TraesCS6D01G320500 | EnsemblPlants:TraesCS6D01G320500.1 | TIGR:cd00046 |
| TIGR:cd00079 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:428477045..428481871
Molecular Weight (calculated)
85463.5 Da
IEP (calculated)
8.901
GRAVY (calculated)
-0.468
Length
774 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKALPLKGG SAGSKHGMKS PKELESVLKQ YFGYSEFRGR QLEAIEAVLS GRDCFCLMPT GGGKSMCYQI PALVKTGVVL VISPLIALME NQVSSLKSKG
101: IPAEFLSSTQ TTANKNKIHE DLDSGNPSLK LLYVTPELVA TSGFKAKLTK LHNRGLLGLV AIDEAHCIST WGHDFRPSYR KISSLRKQFP DIPILALTAT
201: AVPKVQKDVI SSLSLQNPVI LKASFNRPNI FYEVRYKDLL DDVYSDISNL LKSSGNVCSI IYCLERAACD DLTMHLSQLG ISSAAYHAGL NSKVRTTVLD
301: DWLSSRTQVV VATVAFGGAL FIYWSYSSFQ GIDRQDVRIV CHFNLPKSME SFYQESGRAG RDQQPSRSVL YYGLEDRRRM EFILRNSSSR KQQPSSSSTE
401: LSEKTLADFS QIVDYCESSS CRRKKIIESF GEKVQPTLCQ RTCDACKHPN QVSSHLEDLR RVPNCRFNKI SPVFQTSSVD PKHFNTEFWN REDDVSISDE
501: DISDSDDEEE ALSNITISKL PSKGGFEARL EALERAENAY NQAKGQTKPQ GGNLVDKKSI SQTLRDASRK RLSGALGQAK LRLGDLRFAE EASATHLETE
601: CFKKYQKVGK TFYNSQIAAT VRWLSSSTSD QIHGRLEALT NQTTEAGAAT SSPCIISDAL GKAEKPAEAT VSYELAKTEP SDEFAKTMAS TENMEPSKMS
701: PPEKSVGEEA RRDGAIGTMD LPKIPSFREF MSQKGRDRAT SSSRAESQPR GIPRKAGPVI SKEGTTGTSK KMKL
101: IPAEFLSSTQ TTANKNKIHE DLDSGNPSLK LLYVTPELVA TSGFKAKLTK LHNRGLLGLV AIDEAHCIST WGHDFRPSYR KISSLRKQFP DIPILALTAT
201: AVPKVQKDVI SSLSLQNPVI LKASFNRPNI FYEVRYKDLL DDVYSDISNL LKSSGNVCSI IYCLERAACD DLTMHLSQLG ISSAAYHAGL NSKVRTTVLD
301: DWLSSRTQVV VATVAFGGAL FIYWSYSSFQ GIDRQDVRIV CHFNLPKSME SFYQESGRAG RDQQPSRSVL YYGLEDRRRM EFILRNSSSR KQQPSSSSTE
401: LSEKTLADFS QIVDYCESSS CRRKKIIESF GEKVQPTLCQ RTCDACKHPN QVSSHLEDLR RVPNCRFNKI SPVFQTSSVD PKHFNTEFWN REDDVSISDE
501: DISDSDDEEE ALSNITISKL PSKGGFEARL EALERAENAY NQAKGQTKPQ GGNLVDKKSI SQTLRDASRK RLSGALGQAK LRLGDLRFAE EASATHLETE
601: CFKKYQKVGK TFYNSQIAAT VRWLSSSTSD QIHGRLEALT NQTTEAGAAT SSPCIISDAL GKAEKPAEAT VSYELAKTEP SDEFAKTMAS TENMEPSKMS
701: PPEKSVGEEA RRDGAIGTMD LPKIPSFREF MSQKGRDRAT SSSRAESQPR GIPRKAGPVI SKEGTTGTSK KMKL
001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ
Arabidopsis Description
RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.