Factsheet for TraesCS4D01G133500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G178600.5	Wheat	nucleus	99.0	98.86
TraesCS4B01G138800.1	Wheat	nucleus	98.15	98.29
HORVU0Hr1G008030.1	Barley	nucleus	47.51	93.3
Os11t0708600-02	Rice	nucleus	61.31	82.41
KXG38755	Sorghum	nucleus	82.08	81.27
GSMUA_Achr4P27590_001	Banana	nucleus	72.55	71.53
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	19.91	70.71
KRH39703	Soybean	nucleus	69.56	70.36
Solyc08g074610.1.1	Tomato	nucleus	54.48	69.64
Zm00001d030366_P007	Maize	nucleus	77.38	69.39
Bra038422.1-P	Field mustard	nucleus	66.86	66.67
VIT_02s0087g00070.t01	Wine grape	nucleus	70.84	66.67
AT1G31360.3	Thale cress	nucleus	65.58	62.38
CDY12420	Canola	nucleus	66.71	56.64
TraesCS4D01G144400.2	Wheat	nucleus	26.46	29.95
TraesCS6D01G320500.1	Wheat	nucleus	26.32	23.9
TraesCS2D01G102800.1	Wheat	nucleus	27.45	21.61
TraesCS2D01G303500.1	Wheat	nucleus	36.27	21.23
TraesCS1D01G100000.1	Wheat	nucleus	23.04	19.15
TraesCS2D01G344000.2	Wheat	nucleus	22.33	16.72

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:15.3.3.5.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0043140	InterPro:HRDC_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00570	PFAM:PF09382	PFAM:PF16124
PFscan:PS50967	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF72	InterPro:RQC_domain
InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	EnsemblPlantsGene:TraesCS4D01G133500
EnsemblPlants:TraesCS4D01G133500.1	InterPro:WH-like_DNA-bd_sf	TIGR:cd00046	TIGR:cd00079	SEG:seg	:

Description

No Description!

Coordinates

chr4D:+:119886845..119913470

Molecular Weight (calculated)

79051.6 Da

IEP (calculated)

7.081

GRAVY (calculated)

-0.385

Length

703 amino acids

Sequence
(BLAST)

001: MEDEENIEDE LLLVESQLNG LQDKIKTLLD QQEELYERQA QLKALLEISK TSRDTSNSAP SVALEDWSGK FSWDSQADDT RFNVFGISSY RSNQREIINS
101: IMSGKDVLVI MAAGGGKSLC YQLPAVLRDG ITLVVSPLLS LIQDQVMGLA ALGIPAHMLT STTNKEIEKF IYKALEKGEG ELKILYVTPE KISKSKRFMS
201: KLEKCHHAGR LSLVAIDEAH CCSQWGHDFR PDYKNLGILK IQFPSVPMIA LTATATSKVQ MDLIEMLHIP RSVKFVSTVN RPNLFYRVYE KSSVGKVVID
301: EIANFISESY PNNESGIVYC FSRKECEQVA KELRGRGISA DYYHADMDVV AREKVHMRWS KSKSQVIVGT VAFGMGINKP DVRFVVHHSL SKSMETYYQE
401: SGRAGRDGLP SECVLYYRPG DVPRQSSMVF YENCGLQNLY DIARYCQSKK NCRRGAFFQH FGEAVQECNG MCDNCVSSIE LKDIDATYHT KIIVSLLQEM
501: QQNDQRATLL QLVDKFKTKW KHSGCSNEAV DLKKEEIEQL IVQLILDRVL KEEFQHTAYT TNAYVVLGPL WKPALQGNRP VKLTSAIHSQ DSGDRFKSAK
601: RNQMSNLEAK LDDLRRTISS RNGGVFPHAV LSTEQISLLN CHTPTTIAEL EKLIGKVKTD KYGSDIIEVM RSETGSGKDS GDGAKRQKKD KGVVFVESSE
701: EEG

Best Arabidopsis Sequence Match ( AT1G31360.1 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEL ESIIGKLKTE KYGDRILEEV MRHEAVSEQL VEDPTKEETC KSRLRKRAKT QKDVVLVESS
701: GEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.