Factsheet for GSMUA_Achr4P27590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0708600-02	Rice	nucleus	56.24	76.67
KRH39703	Soybean	nucleus	70.97	72.81
TraesCS4D01G133500.1	Wheat	nucleus	71.53	72.55
HORVU0Hr1G008030.1	Barley	nucleus	36.19	72.07
TraesCS4A01G178600.5	Wheat	nucleus	71.11	72.02
TraesCS4B01G138800.1	Wheat	nucleus	70.55	71.65
KXG38755	Sorghum	nucleus	70.83	71.13
Solyc08g074610.1.1	Tomato	nucleus	54.28	70.36
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	19.07	68.69
VIT_02s0087g00070.t01	Wine grape	nucleus	71.53	68.27
Bra038422.1-P	Field mustard	nucleus	65.22	65.96
AT1G31360.3	Thale cress	nucleus	64.8	62.52
Zm00001d030366_P007	Maize	nucleus	66.76	60.71
CDY12420	Canola	nucleus	65.22	56.16
GSMUA_AchrUn_...	Banana	nucleus	23.98	40.71
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	17.95	26.28
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	24.68	22.77
GSMUA_Achr6P17780_001	Banana	nucleus	37.31	22.41
GSMUA_Achr10P...	Banana	nucleus	23.42	17.94
GSMUA_Achr8P06700_001	Banana	nucleus	20.06	17.88
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	2.66	9.41

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:15.3.3.5.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	GO:GO:0044237	EnsemblPlantsGene:GSMUA_Achr4G27590_001	EnsemblPlants:GSMUA_Achr4P27590_001
EnsemblPlants:GSMUA_Achr4T27590_001	InterPro:HRDC-like_sf	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388	UniProt:M0SSM1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF00570	PFAM:PF09382	PFAM:PF16124	PFscan:PS50967	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF72	InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00487
SMART:SM00490	SUPFAM:SSF47819	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000295B910	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

ATP-dependent DNA helicase Q-like 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G27590_001]

Coordinates

chr4:-:26343091..26360518

Molecular Weight (calculated)

80566.2 Da

IEP (calculated)

7.205

GRAVY (calculated)

-0.343

Length

713 amino acids

Sequence
(BLAST)

001: METADVVAEE LLYVEAELQD VQDQIKALLD RQEGLHKRQS ELKALLEECE TSKSTAQVDS SVATDDWSAD FEWDSRAEDI RFNVFSISSY RANQREIINA
101: VMSRRDVLVI MAAGGGKSLC YQLPALLCDG VALVVSPLLS LIQDQVMGLT TLGIPAYMLT STASKEHEKL IYKSLEKGEG ELKVLYVTPE KISKSKRFMS
201: KLEKCHHGGR LSLIAIDEAH CCSQWGHDFR PDYKNLGILK IQFPTVPLIA LTATATYKVQ VDLMEMLHIP KCVKFVSTIN RPNLFYKVHE KSSVGKVVID
301: EIADFIRGSY SKNESGIIYC FSRKECEQVA KELRGRGISA DHYHADMDVI AREKVHLLWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECVLYYRPG DVPRQSTMVF YENAGLQNLY DIVRYCQSKR NCRRGAFFQH FGEPIQNCNG MCDNCAYEAE VKELDATYHA KVIVSLLHEI
501: QENDQRATML QLVERFKVKI KELGDSIQPV SDLKKEELEQ LIVQLLLEHV LKEEFQHTAY TTNSYIALGS LSKLVLQGKK SVMLEICTRR HEDGMPKSAK
601: RGRMSGLEIK LDELRKELSS SNEGMLPHAI LSTQQISILS TQKPTSITHL QKLIGKVKTE KYGKRIIELI EHYLKSEQVD DDVPGAASGS KTQGNKKQKK
701: KHTVLIESSE EEQ

Best Arabidopsis Sequence Match ( AT1G31360.1 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEL ESIIGKLKTE KYGDRILEEV MRHEAVSEQL VEDPTKEETC KSRLRKRAKT QKDVVLVESS
701: GEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.