Factsheet for Solyc08g074610.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	30.36	84.34
HORVU0Hr1G008030.1	Barley	nucleus	46.91	72.07
Os11t0708600-02	Rice	nucleus	67.64	71.13
KRH39703	Soybean	nucleus	72.91	57.7
VIT_02s0087g00070.t01	Wine grape	nucleus	75.82	55.82
TraesCS4D01G133500.1	Wheat	nucleus	69.64	54.48
Bra038422.1-P	Field mustard	nucleus	69.82	54.47
TraesCS4A01G178600.5	Wheat	nucleus	69.64	54.4
GSMUA_Achr4P27590_001	Banana	nucleus	70.36	54.28
TraesCS4B01G138800.1	Wheat	nucleus	69.09	54.13
KXG38755	Sorghum	nucleus	68.55	53.1
AT1G31360.3	Thale cress	nucleus	70.73	52.64
CDY12420	Canola	nucleus	69.82	46.38
Zm00001d030366_P007	Maize	nucleus	63.64	44.64
Solyc09g018710.2.1	Tomato	cytosol	29.45	39.51
Solyc01g100280.2.1	Tomato	nucleus	35.09	27.41
Solyc07g042010.2.1	Tomato	nucleus	29.09	23.36
Solyc01g103960.2.1	Tomato	nucleus	40.0	18.64
Solyc01g099460.1.1	Tomato	nucleus	27.09	17.53
Solyc05g014690.1.1	Tomato	nucleus	25.09	13.77
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	12.91	13.12
Solyc09g018690.2.1	Tomato	nucleus	2.0	2.17

Protein Annotations

MapMan:15.3.3.5.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0006950
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	UniProt:K4CMH9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF72	InterPro:RecQ_Zn-bd	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc08g074610.1	EnsemblPlants:Solyc08g074610.1.1	TIGRFAMs:TIGR00614	UniParc:UPI000276B0E4
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:58701799..58730405

Molecular Weight (calculated)

62707.0 Da

IEP (calculated)

6.849

GRAVY (calculated)

-0.305

Length

550 amino acids

Sequence
(BLAST)

001: MGYFVHLYRP SPSTSLSSFQ KYHIFSVQKP NEHYKLTGHF LSGFFVSNIM GRTEELLEEL INVEVELLDV QDQIKYLLDR QEKLHERQFE LKALVESCES
101: SSGRASDAAA VPVDDWSRPF EWDSQADDIR FNVFGISKYR ANQREIINTI MSGRDVLVIM AAGGGKSLCY QLPAVLRDGV ALVVSPLLSL IQDQVMGLAA
201: LGIPAFMLTS TTTKENEKFI YKALEKGGDE LKILYVTPEK ISKSKRFMSK LEKCHHAGRL SLISVDEAHC CSQWGHDFRP DYKNLGILKT QFPNVPMVAL
301: TATATKKVQD DLMEMLHIPR CVKFVSSVNR PNLYYMVREK SSIAKTVVDE IAEYIQSSYP NNESGIVYCF SRKECEQVAQ ELRERGISAD HYHADMDVNA
401: RERVHLRWSN GKLQVIVGTV AFGMGINKPD VRFVVHHSLS KSMETYYQES GRAGRDGLPS ECVLFFRPAD APRQSSMVFY ENSGLKNLYD IVRYCQSKRE
501: CRRSAFFRHF AEPLQECNGM CDNCAFSNEV EELDVSKCHN TLWMFSLESY

Best Arabidopsis Sequence Match ( AT1G31360.1 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEL ESIIGKLKTE KYGDRILEEV MRHEAVSEQL VEDPTKEETC KSRLRKRAKT QKDVVLVESS
701: GEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.