Factsheet for Solyc09g018690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97959	Canola	nucleus	8.88	16.85
CDX89177	Canola	nucleus	8.88	16.85
KRH58739	Soybean	cytosol	2.37	6.9
Solyc09g018710.2.1	Tomato	cytosol	5.52	6.83
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	2.56	6.44
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	6.71	6.28
Solyc07g042010.2.1	Tomato	nucleus	8.28	6.13
Solyc01g103960.2.1	Tomato	nucleus	10.85	4.66
Solyc01g099460.1.1	Tomato	nucleus	4.34	2.59
Zm00001d025722_P002	Maize	nucleus	4.73	2.59
TraesCS2D01G344000.2	Wheat	nucleus	4.73	2.56
EES12342	Sorghum	plastid	4.73	2.48
TraesCS2B01G363700.1	Wheat	nucleus	4.54	2.48
TraesCS2A01G345300.1	Wheat	nucleus	4.54	2.47
Solyc05g014690.1.1	Tomato	nucleus	4.73	2.4
Os04t0486800-01	Rice	nucleus	4.34	2.38
HORVU2Hr1G084110.2	Barley	plastid	4.34	2.32
Solyc08g074610.1.1	Tomato	nucleus	2.17	2.0
Solyc01g100280.2.1	Tomato	nucleus	2.37	1.7
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	1.18	1.23
OQU81827	Sorghum	cytosol, extracellular	0.39	1.12

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:35.2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140
GO:GO:0044237	InterPro:HRDC-like_sf	InterPro:HRDC_dom	InterPro:Helicase_HTH	InterPro:IPR002121	InterPro:IPR036388
UniProt:K4CSD1	PFAM:PF00570	PFAM:PF09382	PFAM:PF14493	PFscan:PS50967	PANTHER:PTHR13710
PANTHER:PTHR13710:SF120	InterPro:RQC_domain	SMART:SM00341	SMART:SM00956	SUPFAM:SSF46785	SUPFAM:SSF47819
EnsemblPlantsGene:Solyc09g018690.2	EnsemblPlants:Solyc09g018690.2.1	UniParc:UPI000276C2FF	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:

Description

No Description!

Coordinates

chr9:-:16650956..16659134

Molecular Weight (calculated)

56733.4 Da

IEP (calculated)

4.917

GRAVY (calculated)

-0.374

Length

507 amino acids

Sequence
(BLAST)

001: MKEKDLAREA FLLMACIQSC GGRWGLNLPI GILRGSRSKK IVDAQFDKLP FHGLGKDLSA NWWKGLAYQL ISRDYLVETF KDMYKTVSVS EKGLQFLRSS
101: SPDHQPPLFL AETPEMDLDE KNIDIPSETS EINGLAFREF EGFSEAETRL YKILIEERIK LARATGTAPY AVCGDQTLKR ISLTRPSTKA RLANIDGVNQ
201: HFIKLYGDNF LLSIKHLSEA CNLSLDGEPT SQTSVPSKTL TVPINKKLTP AKFEAWKMWH EDGLTFKEIA NFPSRAVAIK EQTVLDYILE AAREGCKMNW
301: TRFCEETGLT RETFLSIQNA VSKVGREKLK PIKTELPEEI KAYLTMQEAG VSAEVFSYKS EQSCNGDECL TEISEVLQNS IIQSDMQGDD DIGEAPGITC
401: ASSPGETEGA ESHLLTESRK EAASSEGDFL IHTKRQKVEA AEKESFRALD ATEESILSWL KNSDDGVTLS DLLEHFNGST EKSLVNLLCC LEGEFLIYRK
501: NNVYKLL

Best Arabidopsis Sequence Match ( AT1G03180.2 )
(BLAST)

001: MSVLLKTRNF NLQLWFWLHK APSTNMTVVG YLHLCRVLQD MSLEFEGLQT EFMDLETNLA EPQVKPLVRR KLMSRKREVK NEIKKLEKLM KTISSLRSAL
101: QLMIREAPGI QKVVLILGGS PLRPQNAYEL LFTQRRDHVL GYEGDFAKSK AAEALSKKTI RALISTGAGS TSYPGPMRLF ILVHAPPTLN LPQHFLPKRD
201: FRYNRKFVPS KLRFKCRTQD NATNSPPTND LIWYQCRHVI KGLAFHQPVE E

Arabidopsis Description

Non-structural protein [Source:UniProtKB/TrEMBL;Acc:Q5Q0J3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.