CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	53.07	19.51
Zm00001d025722_P002	Maize	nucleus	72.07	13.9
EES12342	Sorghum	plastid	73.74	13.66
Os04t0486800-01	Rice	nucleus	69.83	13.5
VIT_01s0010g02590.t01	Wine grape	mitochondrion	50.84	13.23
TraesCS2B01G363700.1	Wheat	nucleus	66.48	12.82
TraesCS2A01G345300.1	Wheat	nucleus	66.48	12.77
HORVU2Hr1G084110.2	Barley	plastid	66.48	12.54
TraesCS2D01G344000.2	Wheat	nucleus	65.36	12.46
KRH42637	Soybean	nucleus	49.72	9.85
AT1G27880.1	Thale cress	nucleus	49.16	9.66
CDY03955	Canola	nucleus	49.16	9.55
Solyc05g014690.1.1	Tomato	nucleus	50.84	9.08
Bra030065.1-P	Field mustard	nucleus	49.16	9.05
CDY15702	Canola	nucleus	49.16	9.05
EES10228	Sorghum	nucleus	30.17	8.65
KXG38755	Sorghum	nucleus	27.93	7.04
KXG31219	Sorghum	nucleus	27.93	6.65
EES19033	Sorghum	nucleus	27.93	5.79
EER97745	Sorghum	nucleus	27.93	5.55
EES06253	Sorghum	nucleus	26.82	4.02
KRH58739	Soybean	cytosol	0.56	0.57
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	0.56	0.5
Solyc09g018690.2.1	Tomato	nucleus	1.12	0.39
CDX97959	Canola	nucleus	0.0	0.0
CDX89177	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:OQU81827	EnsemblPlantsGene:SORBI_3006G127350	Gene3D:3.40.50.300	InterPro:P-loop_NTPase	PANTHER:PTHR13710	PANTHER:PTHR13710:SF108
ProteinID:OQU81827	ProteinID:OQU81827.1	ProteinID:OQU81828.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52540
UniParc:UPI000B8BB299	UniProt:A0A1Z5RDP6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:49236466..49239852

Molecular Weight (calculated)

20706.2 Da

IEP (calculated)

6.877

GRAVY (calculated)

0.157

Length

179 amino acids

Sequence
(BLAST)

001: MATNPILLWE LPAFLPGGLL ASNQTSDEFH ETLQRLHGGF FNEEFLLIFR NGLPICLVAI DEAHFISEWS HNFRPLYLRL LVLLLRRKLN VQYILAMNAT
101: ATTQTLEEII IVYCKLQVIS FLFPQDVHTY VQYLNLSDTT AKETGHAGRD GRLSYCHILL DSTTFYKSRS LNVLWRNFI

Best Arabidopsis Sequence Match ( AT1G27880.1 )
(BLAST)

001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T

Arabidopsis Description

RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.