CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018287_P001	Maize	nucleus	87.9	89.69
Os02t0780800-01	Rice	cytosol	38.16	89.13
TraesCS6A01G339900.1	Wheat	nucleus	77.66	76.64
TraesCS6B01G371000.2	Wheat	nucleus	76.86	75.95
TraesCS6D01G320500.1	Wheat	nucleus	77.26	75.06
CDY41637	Canola	nucleus	29.92	67.37
VIT_11s0016g00850.t01	Wine grape	nucleus	56.12	58.53
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	57.71	56.14
AT4G35740.1	Thale cress	nucleus	52.79	55.68
Bra010520.1-P	Field mustard	nucleus	52.39	54.95
CDY64039	Canola	nucleus	52.39	54.95
Solyc07g042010.2.1	Tomato	nucleus	50.0	54.89
KRH37506	Soybean	nucleus	53.59	54.17
EES10228	Sorghum	nucleus	24.2	29.17
OQU81827	Sorghum	cytosol, extracellular	6.65	27.93
KXG38755	Sorghum	nucleus	25.93	27.46
EER97745	Sorghum	nucleus	25.8	21.53
EES19033	Sorghum	nucleus	22.61	19.68
EES06253	Sorghum	nucleus	26.33	16.57
EES12342	Sorghum	plastid	19.81	15.42

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A194YSK1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006310	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0036310	GO:GO:0043138	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KXG31219	ProteinID:KXG31219	ProteinID:KXG31219.1	ProteinID:OQU85825.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3004G319400
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0007F2486F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:65450667..65455901

Molecular Weight (calculated)

82812.7 Da

IEP (calculated)

9.102

GRAVY (calculated)

-0.444

Length

752 amino acids

Sequence
(BLAST)

001: MKGVLQIKGA SGREKKAPKE LESVLNQYFG YSGFRGKQLE AIEAVLSGRD CFCLMPTGGG KSMCYQVPAL VKTGIVLVIS PLIALMENQV ASLKNKGIPA
101: EFLSSTQASH TKQRIHEDLD TGNPSLKLLY VTPELVATSG FMAKLKKLYN RGLLGLVAID EAHCISTWGH DFRPSYRKLS SLRKQFPDIP LLALTATAVP
201: KVQKDVISSL CLQNPVILRA SFNRPNIFYE VRYKDLLDDV YSDISNLLKS SGNACSIIYC LERAACDDLS MHLSQQGVSS AAYHAGLNSK VRSSVLDDWL
301: SSRTQVVVAT VAFGMGIDRQ DVRIVCHFNL PKSMESFYQE SGRAGRDQRP SRSVLYYGLD DRRRMEFILR NPKINKAQPS SSSNELSEKA LADFSQIVDY
401: CESSSCRRKK IIESFGEKVQ PTLCQRSCDA CKHPNLVSSR LEELRRVPNC RFNKISPVFQ SSVKPAHLDT EFWNREDEAS ISAEDISDSD DGNEVVSNIA
501: ISKVPAKAGL DAKFKALERA ENAYYQGKGQ TKQQGGGLAD KKSISQTLRD ACRKRLLDAL GQAKLRLGNI PCDDEASATH LETECFKKYE KVGKTFYNSQ
601: IAATVRWLSS ATSSQMHDRL HAVIDQTKDD GASGSPDIVP ESPPASPKIV GTKPGETSNY EADVKPQHIC KLGKRGHSDV STEGAAASTG NMELPSIPTG
701: NMVLPAIPTF REFLSQKGRD RAKSYSNSQP SGIRRKSSGQ VDKEETSKRM KS

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.