Factsheet for TraesCS6B01G371000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G339900.1	Wheat	nucleus	95.93	95.8
TraesCS6D01G320500.1	Wheat	nucleus	95.14	93.54
Os02t0780800-01	Rice	cytosol	37.45	88.51
KXG31219	Sorghum	nucleus	75.95	76.86
Zm00001d018287_P001	Maize	nucleus	71.09	73.41
CDY41637	Canola	nucleus	29.83	67.96
VIT_11s0016g00850.t01	Wine grape	nucleus	55.06	58.11
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	56.5	55.63
AT4G35740.1	Thale cress	nucleus	51.51	54.98
Bra010520.1-P	Field mustard	nucleus	51.64	54.81
CDY64039	Canola	nucleus	51.64	54.81
KRH37506	Soybean	nucleus	53.35	54.57
Solyc07g042010.2.1	Tomato	nucleus	47.83	53.14
TraesCS4B01G126600.1	Wheat	nucleus	23.78	29.43
TraesCS4B01G138800.1	Wheat	nucleus	24.05	26.07
TraesCS2B01G120600.1	Wheat	nucleus	25.1	21.39
TraesCS1B01G119200.1	Wheat	nucleus	22.21	19.98
TraesCS2B01G321700.1	Wheat	nucleus	26.15	16.57
TraesCS2B01G363700.1	Wheat	nucleus	19.32	15.84

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0036310	GO:GO:0043138	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF16124	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	InterPro:RecQ_Zn-bd
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	EnsemblPlantsGene:TraesCS6B01G371000	EnsemblPlants:TraesCS6B01G371000.2
TIGR:cd00046	TIGR:cd00079	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:-:644479012..644484114

Molecular Weight (calculated)

84149.7 Da

IEP (calculated)

9.146

GRAVY (calculated)

-0.537

Length

761 amino acids

Sequence
(BLAST)

001: MKKALPLKGG SGGSRHGTKS PKELESILKQ YFGYSEFRGR QLEAIEAVLS GRDCFCLMPT GGGKSMCYQI PALVKTGVVL VISPLIALME NQVSSLKSKG
101: IPAEFLSSTQ TTANKNKIHE DLDSGNPSLK LLYVTPELVA TSGFKAKLTK LHNRGLLGLV AIDEAHCIST WGHDFRPSYR KISSLRKQFP DIPILALTAT
201: AVPKVQKDVI SSLSLQNPVI LKASFNRPNI FYEVRYKDLL DDVYSDISNL LKSSGNVCSI IYCLERAACD DLTMHLSQQG ISSAAYHAGL NSKVRTTVLD
301: DWLSSRTQVV VATIAFGMGI DRQDVRIVCH FNLPKSMESF YQESGRAGRD QQPSRSVLYY GLEDRRRMEF ILRNSSSRKQ QPSSSSTELS EKTLADFSQI
401: VDYCESSSCR RKKIIESFGE KVQPTLCQRT CDACKHPNQV SSRLEDLRRV PNSRFNKISP VFKSSSVDPK HFDTEFWNRE DDVSISNEDI SDSDDEEEAV
501: SNIAISKLPS KGGFEARLDA LERAENAYNQ AKGQTKQQGG NLVDKKSISQ TLRDASRKRL SDALAQAKLR LGNLRFAEEA SAAHLETECF KKYQKVGKTF
601: YNSQIAATVR WLSSSTSDQI HDRLETLTNQ TTEAGAATSS PCNISDALGK AEKPAEATTS HEHAKTKPSD EFAKTMASTE NMEPSKMSPS EKSIDEEARD
701: RAISTMDLPK IPSFREFMSQ KGRSHTTGSS RAESQPRGIP RKAGPVISKE GTTGTSKKMK L

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.