Factsheet for Zm00001d018287_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0780800-01	Rice	cytosol	38.53	88.2
KXG31219	Sorghum	nucleus	89.69	87.9
TraesCS6A01G339900.1	Wheat	nucleus	73.81	71.39
TraesCS6B01G371000.2	Wheat	nucleus	73.41	71.09
TraesCS6D01G320500.1	Wheat	nucleus	73.95	70.41
CDY41637	Canola	nucleus	30.26	66.77
VIT_11s0016g00850.t01	Wine grape	nucleus	54.41	55.62
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	55.9	53.3
AT4G35740.1	Thale cress	nucleus	51.42	53.16
Bra010520.1-P	Field mustard	nucleus	51.02	52.44
CDY64039	Canola	nucleus	51.02	52.44
KRH37506	Soybean	nucleus	52.78	52.28
Solyc07g042010.2.1	Tomato	nucleus	48.58	52.26
Zm00001d048672_P001	Maize	nucleus	24.02	28.1
Zm00001d030366_P007	Maize	nucleus	22.93	21.56
Zm00001d010866_P004	Maize	nucleus	22.66	19.24
Zm00001d015212_P006	Maize	nucleus	26.05	16.34
Zm00001d025722_P002	Maize	nucleus	19.95	15.84

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6HM55	ProteinID:AQK75453.1	ProteinID:AQK75458.1	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0036310	GO:GO:0043138
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF16124	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105
InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000842D07B
EnsemblPlantsGene:Zm00001d018287	EnsemblPlants:Zm00001d018287_P001	EnsemblPlants:Zm00001d018287_T001	SEG:seg	:	:

Description

ATP-dependent DNA helicase Q-like 3

Coordinates

chr5:-:217939574..217950955

Molecular Weight (calculated)

81530.7 Da

IEP (calculated)

9.010

GRAVY (calculated)

-0.333

Length

737 amino acids

Sequence
(BLAST)

001: MKGVLPIKGA SGREKKAPKE LESVLNRYFG YSGFRGKQLE AIEAVLSGRD CFCLMPTGGG KSMCYQIPAL VKTGIVLVIS PLIALMENQV ASLKNKGVPA
101: EFLSSTQASH TKQRIHEDLD TGNPSLKLLY VTPELVATSS FMAKLKKLYN RGLLGLVAID EAHCISSWGH DFRPSYRKLS SLRKQFPDIP LLALTATAVP
201: KVQKDVVSSL CLQNPVILRA SFNRPNIFYE VRYKDLLDDV YSDISNLLKS SGNVCSIIYC LERAACDDLS MHLSQQGVSC AAYHAGLNSK VRSSVLDDWL
301: SSRTQVVVAT VAFGTNVFSP YFMYISASIW PLAIGLWILL HRMGIDRQDV RIVCHFNLPK SMESFYQESG RAGRDQRPSR SVLYYGLDDR RRMIIDYCEI
401: SSCRRKKIIE SFGEKVQPTL CQRSCDACKH PNLVLSRLEE LRRVPNCRFN KISPVFQSSV KEAHLDTEFW NREDEASLSA EDISDSDDGN EVVSNIAISK
501: VPAKAGLDAK FKALERAENA YYQGKGQAKQ QGGGLADKKS ISETLRDACR KRLLDALGQA KLRLGNIPCG DEASATHLET ECFKKYVKAG KTFYNSQIAA
601: TVRWLSSATL SQMRDRLDTL IDRTKDDGAS GCPDIVPESP PASPEIVVGA RSGETSNDKP QHICELKSSD ESAKGAASST GNMVLPAIPT FREFLSQKGR
701: DRAKCYSNSN ATNQPSGIRR KFSGHLDKEE ASKRMKS

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.