Factsheet for Zm00001d010866_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19033	Sorghum	nucleus	89.98	90.39
TraesCS1D01G100000.1	Wheat	nucleus	71.43	73.29
TraesCS1B01G119200.1	Wheat	nucleus	70.97	72.81
HORVU1Hr1G021560.16	Barley	nucleus	69.93	71.75
Os05t0150600-02	Rice	nucleus	69.24	71.21
TraesCS1A01G091400.2	Wheat	nucleus	71.2	71.2
KRG92892	Soybean	nucleus	49.42	50.23
GSMUA_Achr8P06700_001	Banana	nucleus	46.2	50.12
AT5G27680.2	Thale cress	nucleus	47.35	47.9
Solyc01g099460.1.1	Tomato	nucleus	44.82	45.76
Bra009948.1-P	Field mustard	nucleus	46.89	44.19
CDX80626	Canola	golgi, mitochondrion	32.72	37.72
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	22.47	36.04
CDX80633	Canola	nucleus	15.09	35.41
CDX80627	Canola	nucleus	15.09	35.22
Zm00001d048672_P001	Maize	nucleus	18.66	25.71
Zm00001d018287_P001	Maize	nucleus	19.24	22.66
Zm00001d030366_P007	Maize	nucleus	17.05	18.88
Zm00001d025722_P002	Maize	nucleus	16.94	15.84
Zm00001d015212_P006	Maize	nucleus	18.43	13.62

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100382628	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:AQK95136.1	EMBL:BT064912
UniProt:C0P9E3	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006310
GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	GO:GO:0043138	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR036388	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF69	InterPro:RecQ_Zn-bd	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000194B004	InterPro:WH-like_DNA-bd_sf	EnsemblPlantsGene:Zm00001d010866
EnsemblPlants:Zm00001d010866_P004	EnsemblPlants:Zm00001d010866_T004	SEG:seg	:	:	:

Description

ATP-dependent DNA helicase Q-like SIM

Coordinates

chr8:-:131137506..131151595

Molecular Weight (calculated)

95502.8 Da

IEP (calculated)

8.594

GRAVY (calculated)

-0.401

Length

868 amino acids

Sequence
(BLAST)

001: MEPDAAGCDV SADGLIAELL DMGFEFDAIS AAVGAVGPRR AEVLEVLLGG SDARAGQARR GGGVPGRPAL STAQPRPAGR GMKLSNPRGR LRQSSITDHV
101: ASATGGGKES GREANISFPC SSAPGGPRVM PVAVDFCSEP GPQSQSLVEN STVESDQMDR ISAVLQKHFG FSCLKAFQKE VLDAWSAHRD CIVLAATGSG
201: KSLCFQIPAL LTTKVVVVIS PLISLMHDQC LKLANHGVSA CFLGSGQPDS RVEGKAMAGM YKIVYVCPET ILRLMEPLKK LAEKPGIALF AIDEVHCVSK
301: WGHDFRPDYR RLSALRENFS SSKLKFLKHD IPLMALTATA TIPVREDITK SLKMSKDTAI VLTSFFRPNL RFSVKHSKTS ASSYGKDFQE LIGAYKASRE
401: GQQILHGIDT DSESSSYESL NDSASDDEDA NVISANHGDK NVGKTKTSMT LVEENIENEL DLYQGVDNFD VSCGEFLECS QPESSKSPAQ SNQTSSSDCG
501: VQGSTIVYVP TRKQTVELAN FLCKSGLRAA AYNAKMPKSH LRQVHQQFHC NDLEVVVATI AFGMGIDKSN VRRIIHYGLP QSLEAYYQEA GRAGRDGKLS
601: DCTLYYNFLR TPTLLPNKRS EEQAKAAYRM LRDCFHYSLN TSTCRAKILV KYFGEDFGPD GCRMCDICTN GPPQMHDFKE EAIVFMNVLQ GRSGGETDEM
701: IYSRVPHYSS GRRGFGEAPN FRMVVSHIRE KLPRFAATDK IWWQGLSRIL EGLRYVEEAA ETPRVSMQYP ELTEDGLKFL SSSQSEAPLY AYPDAAMLLA
801: MKEPRPFSGF SDWGRGWADP ETRRQRLAGK KAGRRKRKWR SRGRQQQPGG FTTARERLTA ILAKKKKR

Best Arabidopsis Sequence Match ( AT5G27680.2 )
(BLAST)

001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE

Arabidopsis Description

RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.