Factsheet for AT5G27680.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009948.1-P	Field mustard	nucleus	80.19	74.7
CDX80627	Canola	nucleus	27.39	63.17
CDX80633	Canola	nucleus	27.16	62.97
CDX80626	Canola	golgi, mitochondrion	54.43	62.02
KRG92892	Soybean	nucleus	53.73	53.98
TraesCS1B01G119200.1	Wheat	nucleus	48.02	48.7
HORVU1Hr1G021560.16	Barley	nucleus	48.02	48.7
TraesCS1D01G100000.1	Wheat	nucleus	47.79	48.46
Solyc01g099460.1.1	Tomato	nucleus	47.9	48.35
GSMUA_Achr8P06700_001	Banana	nucleus	44.76	48.0
EES19033	Sorghum	nucleus	47.9	47.57
Zm00001d010866_P004	Maize	nucleus	47.9	47.35
TraesCS1A01G091400.2	Wheat	nucleus	47.79	47.23
Os05t0150600-02	Rice	nucleus	45.45	46.21
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	22.03	34.94
AT3G05740.1	Thale cress	nucleus	19.46	27.56
AT1G31360.3	Thale cress	nucleus	20.51	23.82
AT4G35740.1	Thale cress	nucleus	19.11	23.0
AT1G27880.1	Thale cress	nucleus	17.02	16.03
AT1G10930.1	Thale cress	nucleus	19.7	14.23

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.8.10	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:832830	EMBL:AC007478
EMBL:AC069556	ProteinID:AED93714.1	EMBL:AJ404475	ProteinID:ANM69089.1	ProteinID:ANM69091.1	ProteinID:ANM69093.1
ArrayExpress:AT5G27680	EnsemblPlantsGene:AT5G27680	RefSeq:AT5G27680	TAIR:AT5G27680	RefSeq:AT5G27680-TAIR-G	EnsemblPlants:AT5G27680.2
EMBL:AY059754	EMBL:AY133823	Unigene:At.10179	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043138	GO:GO:0043140
GO:GO:0046872	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR015940
InterPro:IPR036388	RefSeq:NP_001330792.1	RefSeq:NP_001330794.1	RefSeq:NP_001330796.1	RefSeq:NP_568499.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	PFscan:PS50030	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR13710	PANTHER:PTHR13710:SF69	UniProt:Q9FT69	Symbol:RECQSIM	InterPro:RecQ_Zn-bd	SMART:SM00487
SMART:SM00490	SUPFAM:SSF46934	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI00000A6EB6	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]

Coordinates

chr5:-:9793745..9799149

Molecular Weight (calculated)

97471.0 Da

IEP (calculated)

7.358

GRAVY (calculated)

-0.534

Length

858 amino acids

Sequence
(BLAST)

001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.