Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G100000.1 | Wheat | nucleus | 94.01 | 96.45 |
| TraesCS1B01G119200.1 | Wheat | nucleus | 93.32 | 95.74 |
| HORVU1Hr1G021560.16 | Barley | nucleus | 91.94 | 94.33 |
| EES19033 | Sorghum | nucleus | 72.35 | 72.69 |
| Os05t0150600-02 | Rice | nucleus | 70.62 | 72.63 |
| Zm00001d010866_P004 | Maize | nucleus | 71.2 | 71.2 |
| KRG92892 | Soybean | nucleus | 49.88 | 50.7 |
| GSMUA_Achr8P06700_001 | Banana | nucleus | 46.2 | 50.12 |
| AT5G27680.2 | Thale cress | nucleus | 47.23 | 47.79 |
| Solyc01g099460.1.1 | Tomato | nucleus | 45.28 | 46.24 |
| Bra009948.1-P | Field mustard | nucleus | 47.12 | 44.41 |
| CDX80626 | Canola | golgi, mitochondrion | 33.06 | 38.11 |
| Solyc02g088430.1.1 | Tomato | extracellular, mitochondrion, plastid, vacuole | 22.12 | 35.49 |
| CDX80633 | Canola | nucleus | 14.75 | 34.59 |
| CDX80627 | Canola | nucleus | 14.75 | 34.41 |
| TraesCS4A01G170100.1 | Wheat | nucleus | 19.24 | 26.89 |
| TraesCS4A01G178600.5 | Wheat | nucleus | 18.66 | 23.01 |
| TraesCS6A01G339900.1 | Wheat | nucleus | 19.12 | 21.78 |
| TraesCS2A01G103300.1 | Wheat | nucleus | 21.2 | 20.6 |
| TraesCS2A01G345300.1 | Wheat | nucleus | 17.4 | 16.2 |
| TraesCS2A01G304900.1 | Wheat | nucleus | 19.01 | 13.74 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006310 | GO:GO:0006950 | GO:GO:0008026 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043138 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR036388 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF16124 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF69 | InterPro:RecQ_Zn-bd |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 | EnsemblPlantsGene:TraesCS1A01G091400 | EnsemblPlants:TraesCS1A01G091400.2 |
| InterPro:WH-like_DNA-bd_sf | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1A:-:83822764..83835421
Molecular Weight (calculated)
96315.7 Da
IEP (calculated)
8.201
GRAVY (calculated)
-0.369
Length
868 amino acids
Sequence
(BLAST)
(BLAST)
001: MDANSAGTDV SADHVIAELL EMGFEFDKIS EAIGVVGPCR ADVVEFVLNG SGSAQRKPGG GSQRRSSDRS ARLANPRGKF KQSSITDHIA STTGSKTESC
101: GEEPSTSYSC LAANMNPAST AALCFQPKPK HQTLVDDPRG EFDRTDKICA VLQKHFGFSC VKSFQKEALD AWFAHKDCLV LAATGSGKSL CFQIPALLTT
201: KVVVVISPLI SLMHDQCLKL AKHGISACFL GSGQPDNRVE GKAMAGMYKI IYVCPETVLR LMEPLKKLAE KPGIALFAID EVHCVSKWGH DFRPDYRKLS
301: VLRQNFCSSK LKFLEHDIPL MALTATATLP VREDILKSLK MSELTVVVLT SFFRQNLRFN VKHSKTSASS YGKDFQELIG TYNASRNFKG KSQKILHEVE
401: PESESSSYES LDDSASDDED AIADKTKLAK SFVKENAEHE LDQYPGVDDF DVSCGEFLES SRPESFAFPV QSHETSSSES LDQGPTIVYV PTRKGTVELA
501: NYLCKSGLKA AAYNAKMPRS HLRQVHEQFH SNALEVVVAT IAFGMGIDKS NVRRIIHYGL PQSLEAYYQE AGRAGRDGKL SDCTLYCNFM RTPTLLPNKR
601: SDEQTRAAYR MLRDCFHYAL NTSTCRARIL VKYFGEEFGP DGCQMDMWGS GLDVSDSTRI SLKLAFSCDV CINGPPEMHD FKEEAVVFMN VLQAQAGQAI
701: EGMDYNSTDC YISGRRNFGA VPDFRTIVSY IREKIPRFAV TDKIWWQGLA RILEDMGYIQ EAAEIPRVLI QHPELTRAGL NFLSSQPDKE GLYAYPDAAT
801: LLAISNPKSF SSSSEWGRGW ADPEIRRQRL AGKTGRRKRK RGSRRQPAGF TTAKERLSAI LSKSKRRK
101: GEEPSTSYSC LAANMNPAST AALCFQPKPK HQTLVDDPRG EFDRTDKICA VLQKHFGFSC VKSFQKEALD AWFAHKDCLV LAATGSGKSL CFQIPALLTT
201: KVVVVISPLI SLMHDQCLKL AKHGISACFL GSGQPDNRVE GKAMAGMYKI IYVCPETVLR LMEPLKKLAE KPGIALFAID EVHCVSKWGH DFRPDYRKLS
301: VLRQNFCSSK LKFLEHDIPL MALTATATLP VREDILKSLK MSELTVVVLT SFFRQNLRFN VKHSKTSASS YGKDFQELIG TYNASRNFKG KSQKILHEVE
401: PESESSSYES LDDSASDDED AIADKTKLAK SFVKENAEHE LDQYPGVDDF DVSCGEFLES SRPESFAFPV QSHETSSSES LDQGPTIVYV PTRKGTVELA
501: NYLCKSGLKA AAYNAKMPRS HLRQVHEQFH SNALEVVVAT IAFGMGIDKS NVRRIIHYGL PQSLEAYYQE AGRAGRDGKL SDCTLYCNFM RTPTLLPNKR
601: SDEQTRAAYR MLRDCFHYAL NTSTCRARIL VKYFGEEFGP DGCQMDMWGS GLDVSDSTRI SLKLAFSCDV CINGPPEMHD FKEEAVVFMN VLQAQAGQAI
701: EGMDYNSTDC YISGRRNFGA VPDFRTIVSY IREKIPRFAV TDKIWWQGLA RILEDMGYIQ EAAEIPRVLI QHPELTRAGL NFLSSQPDKE GLYAYPDAAT
801: LLAISNPKSF SSSSEWGRGW ADPEIRRQRL AGKTGRRKRK RGSRRQPAGF TTAKERLSAI LSKSKRRK
001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE
Arabidopsis Description
RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.