CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 1
mitochondrion 3
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	golgi, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G27680.2	Thale cress	nucleus	62.02	54.43
Solyc01g099460.1.1	Tomato	nucleus	41.17	36.47
KRG92892	Soybean	nucleus	40.24	35.48
TraesCS1B01G119200.1	Wheat	nucleus	37.98	33.81
HORVU1Hr1G021560.16	Barley	nucleus	37.98	33.81
TraesCS1D01G100000.1	Wheat	nucleus	37.85	33.69
CDY41637	Canola	nucleus	14.87	33.53
TraesCS1A01G091400.2	Wheat	nucleus	38.11	33.06
Os05t0150600-02	Rice	nucleus	37.05	33.06
EES19033	Sorghum	nucleus	37.85	32.99
Zm00001d010866_P004	Maize	nucleus	37.72	32.72
GSMUA_Achr8P06700_001	Banana	nucleus	32.14	30.25
CDY27743	Canola	nucleus	17.66	21.84
CDY66905	Canola	nucleus	17.53	21.67
Solyc02g088430.1.1	Tomato	extracellular, mitochondrion, plastid, vacuole	15.01	20.89
CDY64039	Canola	nucleus	15.67	16.46
CDY12420	Canola	nucleus	16.73	15.22
CDY03955	Canola	nucleus	14.21	11.62
CDY40476	Canola	nucleus	16.87	11.28
CDY12873	Canola	nucleus	16.87	11.25
CDY34669	Canola	nucleus	17.26	11.22
CDY34859	Canola	nucleus	16.87	11.18
CDY15702	Canola	nucleus	14.34	11.11
CDY20972	Canola	nucleus	16.6	10.57
CDY20595	Canola	nucleus	16.6	10.55
CDX80633	Canola	nucleus	1.33	2.7
CDX80627	Canola	nucleus	1.33	2.69
CDY27742	Canola	mitochondrion	0.0	0.0
CDX97959	Canola	nucleus	0.0	0.0
CDX89177	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.8.10	MapMan:17.1.3.1.23	Gene3D:3.30.1230.20	Gene3D:3.40.50.300	GO:A0A078CTZ6	EnsemblPlants:CDX80626
ProteinID:CDX80626	ProteinID:CDX80626.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003735	GO:GO:0003824	GO:GO:0004386	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0006412
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00133762001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR015940	InterPro:IPR038579	InterPro:P-loop_NTPase	PFAM:PD006584	PFAM:PF00270	PFAM:PF00271
PFAM:PF01249	ScanProsite:PS00996	PFscan:PS50030	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710
PANTHER:PTHR13710:SF69	InterPro:Ribosomal_S21e	InterPro:Ribosomal_S21e_CS	InterPro:Ribosomal_S21e_sf	SMART:SM00487	SMART:SM00490
SUPFAM:SSF46934	SUPFAM:SSF52540	SignalP:SignalP-TM	TIGRFAMs:TIGR00614	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI0004EDE88B	SEG:seg	:	:	:	:

Description

BnaC07g28180D

Coordinates

chrLK031821:+:1726657..1730980

Molecular Weight (calculated)

83992.5 Da

IEP (calculated)

8.181

GRAVY (calculated)

-0.286

Length

753 amino acids

Sequence
(BLAST)

001: MARFKTFRVY SKYKRCGFSV VWLLLLCRTC FASPQCLNFR YRLLEFKMQN EEGQVTELYI PRKCSATNRM ITSKDHASVQ LNIGHLDADG IYTGQFTTLA
101: LCGFVRAQGD ADSGVDRLWQ KKKGSYLRFL HLLACGFPET LSSKVSDQSL KALYLWRWRN IDCPLVRPDS LNSMDKLDSC FDEAVMKLVE MGFTKPDAVE
201: AVKAVGKSCG DAVEYLLNRT GGFSSASSLC STKSNSNKTL GKRALPSSFS SGSMRQSSLF DHFRSVDRNK KKGGSFGTSV VSDPSEEMIK PPPLVFTESS
301: GCSEASSTWE KRVDSILRIR FGISSLKSFQ REALSTWVAH KDCLVLAATG SGKSLCFQLP ALLTGKVVVV ISPLISLMHD QCLKLSTHKV SACFLGSGQL
401: DNRIEQKAMQ GMYQIIYVCP ETVVRLIKPL QKLAKTHGIA LFAIDEAHCV SKWGHDFRPD YRKLSMLREN FCVSSLAFLE YDVPIMALTA TATAHVQEDI
501: LQSLHLSKET KTVLTSFFRP NLQFSVKHSR TKSAASYAKD FQNLTDLYSG KRKATGKKLA VISLESEGQN DFGYHDAESI HETDNDDDDE EDPENSLAKQ
601: NSSNGKEMSE EYLEDETDIF QSVDDWDVAC GEFCAMSPCD VLDIPDPSGK QTPDECGHIH SNKAKNLEGP TIIYVPTRKE SVNIAKYLCG VGLKAAAYNA
701: KLPKKHLRQV HQEFHEDKLQ VVVATIAFGM GIDKKNVRKI IHYGWPQVSL RAL

Best Arabidopsis Sequence Match ( AT5G27680.2 )
(BLAST)

001: MDLSSDQLVM KIVEMGFEKL DALEAVKAVG GKSCDDAVEY ILKGNHRTGG FKPASLLCSS GSNKILGKRA MPSSFSSSES KRQSSLLDHF RSVNQNKKKG
101: DTFGTVEVDS QLETVSEHSE EVRKSLAPVF MESSCFPEGQ LLNGCSEASS SWEKRVNSIL RNRFGISSLR SFQREALSTW VAHKDCLVLA ATGSGKSLCF
201: QIPALLTGKV VVVISPLISL MHDQCLKLSR HKVSACFLGS GQLDNCIEEK AMQGMYQIIY VCPETVVRLI KPLQKLAKTH GIALFAIDEA HCVSKWGHDF
301: RPHYRKLSVL RENFCASNLE FLEYDVPIMA LTATATVNVQ EDILESLHLS KETKIVLTSF FRPNLQFSVK HSRTKFASSY AKDFQNLVDL YSEKKNSTGK
401: KLAVISRESE EQTDFGSHDS ENIHETDYDE DEEDQENSLA KKNSSNGKEL SEAYLEDETD IFQSVDDWDV ACGEFCAMPS CELLEIPVPS EKQKDLEGLT
501: IIYVPTRKES VNIAKYLCGV GLKAAAYNAS LPKKHLRQVH QDFHDNKLQV VVATIAFGMG IDKKNVRKII HYGWLQSLEA YYQEAGRAGR DGELAECVLY
601: ADLSRAPTLL PSRRSKEQTE QAYKMLSDCF RYGMNTSQCR AKILVEYFGE EFSSKKCNSC DVCTEGPPEL VDVREEANLL FQVITAFHLQ VDNDSEHAPY
701: EDYGLGNSKQ NKLSHKPNLL FFISKLREQC EKFKETDCLW WKGLARIMEA EGYIKEMDNK DRRVEIKFIQ PTEKGKKQLD FQDDKPLYVY PEADMLLSLK
801: QDRTYSGFSE WGKGWADPEI RRQRLERRER KPRRERKPRK KRTRGRSSTK LHPWRSKE

Arabidopsis Description

RECQSIMATP-dependent DNA helicase Q-like SIM [Source:UniProtKB/Swiss-Prot;Acc:Q9FT69]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.