CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27743	Canola	nucleus	97.21	97.21
AT3G05740.1	Thale cress	nucleus	90.48	90.92
GSMUA_AchrUn_...	Banana	nucleus	50.41	73.1
KRH42322	Soybean	cytosol, nucleus, plastid	17.08	68.87
VIT_14s0060g01440.t01	Wine grape	nucleus	66.67	64.96
PGSC0003DMT400007294	Potato	nucleus	47.13	63.08
Os11t0672700-01	Rice	nucleus	59.61	61.73
TraesCS4D01G144400.2	Wheat	nucleus	58.13	57.0
Zm00001d048672_P001	Maize	nucleus	58.95	56.98
EES10228	Sorghum	nucleus	58.29	56.89
Solyc01g100280.2.1	Tomato	nucleus	65.68	56.82
TraesCS4A01G170100.1	Wheat	nucleus	57.64	56.52
TraesCS4B01G126600.1	Wheat	nucleus	55.83	55.28
HORVU4Hr1G032190.1	Barley	nucleus	57.14	54.29
CDY41637	Canola	nucleus	20.2	36.83
KRH42323	Soybean	cytosol	18.72	35.4
CDY64039	Canola	nucleus	26.93	22.87
CDY12420	Canola	nucleus	29.56	21.74
CDY27742	Canola	mitochondrion	0.82	20.0
CDY34859	Canola	nucleus	36.62	19.63
CDY40476	Canola	nucleus	36.29	19.63
CDY12873	Canola	nucleus	36.29	19.57
CDY34669	Canola	nucleus	36.95	19.41
CDY20972	Canola	nucleus	37.44	19.27
CDY20595	Canola	nucleus	37.44	19.24
CDX80626	Canola	golgi, mitochondrion	21.67	17.53
CDY03955	Canola	nucleus	24.14	15.96
CDY15702	Canola	nucleus	24.3	15.23
CDX80633	Canola	nucleus	5.91	9.73
CDX80627	Canola	nucleus	5.91	9.68
CDX97959	Canola	nucleus	0.16	0.37
CDX89177	Canola	nucleus	0.16	0.37

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078JKE0	UniProt:A0A078JKE0	EnsemblPlants:CDY66905	ProteinID:CDY66905
ProteinID:CDY66905.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0008026
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00056826001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF16124	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	InterPro:RecQ_Zn-bd
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0004EE94F3	SEG:seg

Description

BnaC05g52240DBnaC05g52240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKE0]

Coordinates

chrLK035569:+:2414..5941

Molecular Weight (calculated)

68649.6 Da

IEP (calculated)

5.087

GRAVY (calculated)

-0.453

Length

609 amino acids

Sequence
(BLAST)

001: MKGQDLELEK ARLLSLATKL GFDEESAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DVQALETEAQ GTLAEMFNRA NTSDNGFETD
101: DGESSVQVHV IEDSPESKNK PDVMELDSSS DFEDDDDDED TQFKAPRAGS RNHSLRSMEY SMEDPVSTIS GRKPSVPTSD KDHETPSYEE LQALDDLEFA
201: NLVIFGNRVF RPLQHQACRA SMEKKDCFVL MPTGGGKSLC YQLPATLKAG VTIVISPLLS LIQDQIVALN IKFGVPATFL NSQQTSSQAA IVLQELRRDE
301: PSCKLLYVTP EKIAGSSSFL ETLRCLDRKG LLAGFVVDEA HCVSQWGHDF RPDYRELGCL KQNFPRVPVM ALTATATESV CQDVLKSLRI PRAPVLKMSF
401: DRTNLKYEVI NKTKEPLKQL QELLKDRFKD QSGIVYCLSK SECVDVAKFL NEKCKVKTVY YHAGMPAKQR VDVQRKWQTG EVRIVCATIA FGMGIDKADV
501: RFVIHNTLSK AIESYYQESG RAGRDGLQAQ CICLYQKKDF SRVVCMLRNG QGRNMDRFKS AMAQAKKMQQ YCELKTECRR QMLLDYFGES FDRRICKSSL
601: HPCDNCEKS

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.