Factsheet for HORVU4Hr1G032190.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G144400.2	Wheat	nucleus	91.11	94.04
TraesCS4A01G170100.1	Wheat	nucleus	90.64	93.56
TraesCS4B01G126600.1	Wheat	nucleus	87.36	91.06
Os11t0672700-01	Rice	nucleus	71.14	77.55
EES10228	Sorghum	nucleus	73.95	75.96
Zm00001d048672_P001	Maize	nucleus	72.85	74.13
GSMUA_AchrUn_...	Banana	nucleus	48.52	74.05
PGSC0003DMT400007294	Potato	nucleus	42.28	59.56
VIT_14s0060g01440.t01	Wine grape	nucleus	58.03	59.52
KRH33841	Soybean	nucleus	56.47	59.34
KRH42322	Soybean	cytosol, nucleus, plastid	13.88	58.94
CDY27743	Canola	nucleus	54.76	57.64
AT3G05740.1	Thale cress	nucleus	54.45	57.59
CDY66905	Canola	nucleus	54.29	57.14
Bra039413.1-P	Field mustard	nucleus	52.57	55.25
Solyc01g100280.2.1	Tomato	nucleus	56.16	51.14
HORVU0Hr1G002110.1	Barley	vacuole	9.05	42.96
KRH42323	Soybean	cytosol	16.69	33.23
HORVU0Hr1G008030.1	Barley	nucleus	18.41	32.96
HORVU1Hr1G021560.16	Barley	nucleus	25.9	19.62
HORVU2Hr1G075870.8	Barley	nucleus, plastid	16.69	17.2
HORVU2Hr1G084110.2	Barley	plastid	24.02	16.23
CDY27742	Canola	mitochondrion	0.47	12.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287NQI9	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	EnsemblPlantsGene:HORVU4Hr1G032190	EnsemblPlants:HORVU4Hr1G032190.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	InterPro:RecQ_Zn-bd	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000B460444	SEG:seg	:

Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:A0A287NQI9]

Coordinates

chrchr4H:-:220156556..220162033

Molecular Weight (calculated)

71816.0 Da

IEP (calculated)

8.543

GRAVY (calculated)

-0.385

Length

641 amino acids

Sequence
(BLAST)

001: THPHPQLFAA FTRLTDARVS IRAGVRGRRA CQPEMEVERL LDLAVDYGFD RDFAVAALSR LVHLYGEGGQ DFITVENCGD DFIAALADAT QPTDDWDDLN
101: AIETEACGNL NEMMRKGVND EKGGVVLDTP LFKRADSSSK HNPKDFDIFN ETNTHHDNPV GTQKKAQTRN SKAQTRSSTK STVTKATKRY ESTTLTSNRE
201: GQPNACLWKR GILSYEQLSS LDDINLANAV IFGNKSFRPL QYEACSAALD NKDCFILMPT GGGKSLCYQL PATLHPGVTV VVCPLLSLIQ DQVVALTFKF
301: GIQAAFLNSQ QTSAQASAVI QELRNGTPSF KLLYVTPERM AGNYSFMEIL KGLHQRGLLA RFVIDEAHCV SQWGHDFRPD YRGLGCLKQH FPRVPIMALT
401: ATATEAVRKD VLNTLRIPNA LVLKRSFDRH NLNYMVIGKT RTPQMQLGDL LKERFMNMSG IVYCLSKNEC ADTAKFLREK YKIKCAHYHA GLAARQRSSV
501: QEKWHRGEVK VICATIAFGM GIDKPDVRFV VHNTLSKSIE SYYQESGRAG RDDLPAHCVV LYQKKDFSRI VCMLRSAENF KSETFKVAMD QAKKMQAYCE
601: LKTECRRETL LGHFGEQFNS QRCKDGPSPC DICLKEASRG H

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.