CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	70.2	25.24
KRH42323	Soybean	cytosol	52.98	24.84
KRH33841	Soybean	nucleus	89.4	22.13
CDY27743	Canola	nucleus	68.87	17.08
CDY66905	Canola	nucleus	68.87	17.08
Bra039413.1-P	Field mustard	nucleus	68.87	17.05
AT3G05740.1	Thale cress	nucleus	68.21	17.0
Os11t0672700-01	Rice	nucleus	62.91	16.16
EES10228	Sorghum	nucleus	64.24	15.54
Zm00001d048672_P001	Maize	nucleus	61.59	14.76
TraesCS4B01G126600.1	Wheat	nucleus	58.94	14.47
TraesCS4A01G170100.1	Wheat	nucleus	58.94	14.33
TraesCS4D01G144400.2	Wheat	nucleus	58.94	14.33
HORVU4Hr1G032190.1	Barley	nucleus	58.94	13.88
KRH39703	Soybean	nucleus	35.1	7.63
KRH37506	Soybean	nucleus	35.1	7.12
KRH30702	Soybean	nucleus	28.48	4.94
KRH42637	Soybean	nucleus	29.14	4.87
KRH26366	Soybean	nucleus	37.09	4.86
KRG98073	Soybean	nucleus	29.14	4.78
KRH44073	Soybean	nucleus	36.42	4.74
KRG92892	Soybean	nucleus	26.49	4.68
KRH00028	Soybean	cytosol	0.0	0.0
KRH58739	Soybean	cytosol	0.0	0.0
CDY27742	Canola	mitochondrion	0.0	0.0

Protein Annotations

EMBL:ACUP02004798	EnsemblPlants:KRH42322	EnsemblPlantsGene:GLYMA_08G083400	Gene3D:3.40.50.300	InterPro:Helicase_C	InterPro:IPR001650
InterPro:P-loop_NTPase	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	ProteinID:KRH42322	ProteinID:KRH42322.1	SUPFAM:SSF52540
UniParc:UPI000233883C	UniProt:A0A0R0IMN6	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:6294278..6296608

Molecular Weight (calculated)

17484.5 Da

IEP (calculated)

10.202

GRAVY (calculated)

-0.341

Length

151 amino acids

Sequence
(BLAST)

001: MQFVSFDRPN LKYEVIAKTK EPIKQLGQLL IDRFRNQCGI VYCLSKSECV ELSKLLSEKC KIKTVYYHSG LSAHQRVAVK KKMRFVIHNT MSKSIESYYQ
101: ESGRAGRDNF SSVCIALHQK KDFSRVVCMI RNGQGYKKES FKTAMAHIYV L

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.