Factsheet for GSMUA_AchrUn_randomP12430_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42322	Soybean	cytosol, nucleus, plastid	25.24	70.2
PGSC0003DMT400007294	Potato	nucleus	66.67	61.54
Os11t0672700-01	Rice	nucleus	74.76	53.4
KRH33841	Soybean	nucleus	77.38	53.28
VIT_14s0060g01440.t01	Wine grape	nucleus	76.19	51.2
CDY27743	Canola	nucleus	73.33	50.57
TraesCS4B01G126600.1	Wheat	nucleus	74.05	50.57
CDY66905	Canola	nucleus	73.1	50.41
AT3G05740.1	Thale cress	nucleus	72.62	50.33
TraesCS4D01G144400.2	Wheat	nucleus	74.05	50.08
TraesCS4A01G170100.1	Wheat	nucleus	73.57	49.76
EES10228	Sorghum	nucleus	73.81	49.68
Zm00001d048672_P001	Maize	nucleus	72.86	48.57
HORVU4Hr1G032190.1	Barley	nucleus	74.05	48.52
Bra039413.1-P	Field mustard	nucleus	70.0	48.2
Solyc01g100280.2.1	Tomato	nucleus	74.29	44.32
KRH42323	Soybean	cytosol	27.38	35.71
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	31.19	26.9
GSMUA_Achr4P27590_001	Banana	nucleus	40.71	23.98
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	42.62	23.16
GSMUA_Achr8P06700_001	Banana	nucleus	32.86	17.25
GSMUA_Achr6P17780_001	Banana	nucleus	46.19	16.34
CDY27742	Canola	mitochondrion	0.95	16.0
GSMUA_Achr10P...	Banana	nucleus	28.1	12.67
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	1.9	3.96

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006310	GO:GO:0006950	GO:GO:0007154	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0009991	GO:GO:0016787	GO:GO:0042631
GO:GO:0070417	EnsemblPlantsGene:GSMUA_AchrUn_randomG12430_001	EnsemblPlants:GSMUA_AchrUn_randomP12430_001	EnsemblPlants:GSMUA_AchrUn_randomT12430_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M0U8K2	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF16124	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107
InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0002966EF1

Description

ATP-dependent DNA helicase Q-like 1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12430_001]

Coordinates

chrchrUn_random:+:59265049..59269591

Molecular Weight (calculated)

47467.9 Da

IEP (calculated)

9.034

GRAVY (calculated)

-0.212

Length

420 amino acids

Sequence
(BLAST)

001: MDDILLANVV IFGNKTFRAL QYQGCKAALE NKDCFVLMPT GGGKSLCYQL PATLHPGVTV VICPLLSLIQ DQITTLNIKY GVPATFLNSQ QTASQAMAVI
101: QELRSGKPSC KLLYVTPERI AGNLSFMDIL RCLYQKDLLA RFVVDEAHCV SQWGHDFRPD YRGLGCLKQN FPRVPLMALT ATATRPVRKD ILDTLRIPDA
201: LVLETSFDRS NLKYEVVFKS KDSLKQLGQL VKDRFNNMSG IVYCLSKNEC VEVSKYLNEK CKIRTVYYHA GLAARQRVAV QRKWHTGEGK VVCATIAFGM
301: GIDKADVRFV IHHTMSKSIE SYYQESGRAG RDNLRATCIA FYQKKDFSRV VCMLRSGEGF KSERFKTAMA QAKKMREYCE LKKECRRQTL LEHFGETFSR
401: DGCMTGPSPC DNCLKCYESE

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.