CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42322	Soybean	cytosol, nucleus, plastid	22.13	89.4
GSMUA_AchrUn_...	Banana	nucleus	53.28	77.38
VIT_14s0060g01440.t01	Wine grape	nucleus	71.8	70.08
PGSC0003DMT400007294	Potato	nucleus	51.48	69.01
Os11t0672700-01	Rice	nucleus	59.51	61.73
Solyc01g100280.2.1	Tomato	nucleus	70.82	61.36
TraesCS4D01G144400.2	Wheat	nucleus	60.0	58.94
TraesCS4A01G170100.1	Wheat	nucleus	59.84	58.78
EES10228	Sorghum	nucleus	59.67	58.33
TraesCS4B01G126600.1	Wheat	nucleus	57.87	57.4
Zm00001d048672_P001	Maize	nucleus	58.52	56.67
HORVU4Hr1G032190.1	Barley	nucleus	59.34	56.47
KRH00028	Soybean	cytosol	6.07	49.33
KRH42323	Soybean	cytosol	23.11	43.79
KRH39703	Soybean	nucleus	28.69	25.18
KRH37506	Soybean	nucleus	27.87	22.85
KRH26366	Soybean	nucleus	36.07	19.1
KRH44073	Soybean	nucleus	35.74	18.79
KRG92892	Soybean	nucleus	25.08	17.92
KRH42637	Soybean	nucleus	25.41	17.15
KRH30702	Soybean	nucleus	23.77	16.65
KRG98073	Soybean	nucleus	24.43	16.2
KRH58739	Soybean	cytosol	0.98	3.45

Protein Annotations

EntrezGene:100806070	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02006559	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DNA_helicase_ATP-dep_RecQ	EnsemblPlantsGene:GLYMA_10G148300	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:K7LJH5	EnsemblPlants:KRH33841
ProteinID:KRH33841	ProteinID:KRH33841.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124
ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	InterPro:RecQ_Zn-bd
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0002954700	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:38373112..38378456

Molecular Weight (calculated)

68398.6 Da

IEP (calculated)

6.999

GRAVY (calculated)

-0.375

Length

610 amino acids

Sequence
(BLAST)

001: MGSSSRKKNQ DLELEKVRLI SLALEFGFDE SSANKCLDRL IALYGEDGRD FITVEHCGDD FLAALAESMQ TEDWDDQQEM ESQACGTLTH VLDKTVDTCA
101: DADNDDASRS FFVDIVDDSP QPQRRKGKSH TNVVELDSSD DEDMHCSVSR EKPTDYRSGI TQGSVSSTSS KMQSSFASRD TSSSPTYEEL QALDDIELAN
201: VVIFGNRTFR PLQHQACKAA LAKQDSFILM PTGGGKSLCY QLPATLQPGV TVVVSPLLSL IQDQIITLNL KFGIPSTFLN SQQTASQVTA VLQELRKDKP
301: SCKLLYVTPE RIAGNQSFLE ILKFMHQKGQ LAGFVVDEAH CVSQWGHDFR PDYRGLGSLK LHFPDVPVMA LTATATHAVR EDILKALRIP HALVLERSFD
401: RPNLKYEVIA KTKEPLKQLG QLLIDRFRNQ CGIVYCLSKS ECVEVSKFLN EKCKIKTVYY HAGLAARQRV AVQKKWYDGE VHIVCATIAF GMGIDKPDVR
501: FVIHNTMSKS IESYYQESGR AGRDNFPSVC IALYQKKDFS RVVCMIRNGQ GYKKESFKTA MAQAKKMQEY CEIKAECRRQ TLLKHFGESF DRKDCKYGSS
601: PCDNCLKNVL

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.