Factsheet for PGSC0003DMT400007294

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	61.54	66.67
Solyc01g100280.2.1	Tomato	nucleus	82.86	53.55
KRH33841	Soybean	nucleus	69.01	51.48
VIT_14s0060g01440.t01	Wine grape	nucleus	67.47	49.12
AT3G05740.1	Thale cress	nucleus	62.86	47.19
CDY27743	Canola	nucleus	63.08	47.13
CDY66905	Canola	nucleus	63.08	47.13
Bra039413.1-P	Field mustard	nucleus	63.08	47.05
Os11t0672700-01	Rice	nucleus	59.34	45.92
TraesCS4B01G126600.1	Wheat	nucleus	60.0	44.39
TraesCS4D01G144400.2	Wheat	nucleus	60.0	43.96
EES10228	Sorghum	nucleus	60.0	43.75
TraesCS4A01G170100.1	Wheat	nucleus	59.34	43.48
HORVU4Hr1G032190.1	Barley	nucleus	59.56	42.28
Zm00001d048672_P001	Maize	nucleus	58.46	42.22
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	12.09	27.78
PGSC0003DMT400065388	Potato	cytosol, nucleus	29.01	27.67
CDY27742	Canola	mitochondrion	0.44	8.0
PGSC0003DMT400065395	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0007154	GO:GO:0008026	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0009991	GO:GO:0016787
GO:GO:0042631	GO:GO:0070417	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:M0ZSS2	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400002808	PGSC:PGSC0003DMG400002808
EnsemblPlants:PGSC0003DMT400007294	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI00029568DF	:

Description

DNA helicase hus2 [Source:PGSC_GENE;Acc:PGSC0003DMG400002808]

Coordinates

chr1:+:77996306..78000876

Molecular Weight (calculated)

51208.6 Da

IEP (calculated)

9.230

GRAVY (calculated)

-0.134

Length

455 amino acids

Sequence
(BLAST)

001: MECPLESNHG DKTLSYEELQ RLDDIELANV VVFGNRSFRP LQHQACQACL QKRDCFVLMP TGGGKSLCYQ LSAIVQPGVM IVVSPLLSLI QDQIITLNLN
101: SYLISYSGFA SFFLTSRKDV PSCKLLYVTP ERIAGNLSFQ ETLQCMHRKG QLAGFVIDEA HCVSQWGHDF RPDYRVLGCL KQNFPDVPVM ALTATATHAV
201: REDILSALRI PRALVLETSF DRSNLKYEVT GKSKEPLKQL GNLLLDRFKN LSGIVYCLSK SECVDVSKFL NEKCKIKTVY YHAGLASRQR VAVQKRWRSG
301: EVDIVCATIA FGMGIDKPDV RFVVHNTMSK SIESYYQEAG RAGRDGLPAT CVILYQKKDF SRVVCMLRSG QGYKKESLKR AMEQARKMQK YCELKGNQLY
401: GRLIQQGAHL QEQKMHLGVV SACPALMAQR GESSFFTVIL YFVPKPSQML SFKKA

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.