Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007294 | Potato | nucleus | 27.67 | 29.01 |
| PGSC0003DMT400076140 | Potato | cytosol, nucleus, plasma membrane | 11.32 | 27.27 |
| PGSC0003DMT400065395 | Potato | cytosol | 1.89 | 3.47 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006310 |
| GO:GO:0008026 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M1CDW0 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF16124 | EnsemblPlantsGene:PGSC0003DMG401025422 | PGSC:PGSC0003DMG401025422 | EnsemblPlants:PGSC0003DMT400065388 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF120 | InterPro:RecQ_Zn-bd | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 | UniParc:UPI000296011A | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401025422]
Coordinates
chr9:-:34926696..34936216
Molecular Weight (calculated)
54041.9 Da
IEP (calculated)
7.777
GRAVY (calculated)
-0.237
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: KYFGYTEFRP YQKEIIEKIL DGKDCLVIMA TGSGKSLCYQ VPPLITGKTA VVISPLISLM QDQVMALKQR GIKADYLSSA QTDRGVQSNA ELGHYDILYM
101: TPEKACALPT SFWSRLLKAG MCLLAVDEAH CISEWGHDFS LALTKRDGQY NAAKRRKFWK SETSFESDLF LLDGISSCVL VSREPPEEIS SAMKSMGSIW
201: RRDRKKVEYK QLDKLRNVLL NVPFVGLTAT ATEKVRSDII NSLLMKDHHA AIGSFDRKNL FYGVKSFSRS SQFIDQLVEE ISKYVDNANS TIVYCTTVKD
301: TEEIFKSLLE AGIKAGIYHG QMANKAREEA HRSFIRDEFY VMVATVAFGM GIDKPNVRYV IHYGCPKSLE SYYQESGRCG RDGVPSACWL YYTRSDFGKA
401: DFYSAEARSA SQRKAIMEAF SAAQHYCMLS TCRRKYLLDY FADEYAHDDC VLVANEVVDL RKIKEEEEVR VGVVLCM
101: TPEKACALPT SFWSRLLKAG MCLLAVDEAH CISEWGHDFS LALTKRDGQY NAAKRRKFWK SETSFESDLF LLDGISSCVL VSREPPEEIS SAMKSMGSIW
201: RRDRKKVEYK QLDKLRNVLL NVPFVGLTAT ATEKVRSDII NSLLMKDHHA AIGSFDRKNL FYGVKSFSRS SQFIDQLVEE ISKYVDNANS TIVYCTTVKD
301: TEEIFKSLLE AGIKAGIYHG QMANKAREEA HRSFIRDEFY VMVATVAFGM GIDKPNVRYV IHYGCPKSLE SYYQESGRCG RDGVPSACWL YYTRSDFGKA
401: DFYSAEARSA SQRKAIMEAF SAAQHYCMLS TCRRKYLLDY FADEYAHDDC VLVANEVVDL RKIKEEEEVR VGVVLCM
001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEA SLC
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEA SLC
Arabidopsis Description
RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.