Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G008030.1 | Barley | nucleus | 70.71 | 39.11 |
| Solyc08g074610.1.1 | Tomato | nucleus | 84.34 | 30.36 |
| Os11t0708600-02 | Rice | nucleus | 68.69 | 26.0 |
| TraesCS4D01G133500.1 | Wheat | nucleus | 70.71 | 19.91 |
| KRH39703 | Soybean | nucleus | 69.7 | 19.86 |
| TraesCS4B01G138800.1 | Wheat | nucleus | 70.2 | 19.8 |
| TraesCS4A01G178600.5 | Wheat | nucleus | 70.2 | 19.74 |
| Bra038422.1-P | Field mustard | nucleus | 69.19 | 19.43 |
| GSMUA_Achr4P27590_001 | Banana | nucleus | 68.69 | 19.07 |
| VIT_02s0087g00070.t01 | Wine grape | nucleus | 71.72 | 19.01 |
| KXG38755 | Sorghum | nucleus | 67.68 | 18.87 |
| AT1G31360.3 | Thale cress | nucleus | 68.69 | 18.4 |
| Zm00001d030366_P007 | Maize | nucleus | 68.18 | 17.22 |
| CDY12420 | Canola | nucleus | 69.19 | 16.55 |
| PGSC0003DMT400007294 | Potato | nucleus | 27.78 | 12.09 |
| PGSC0003DMT400065388 | Potato | cytosol, nucleus | 27.27 | 11.32 |
| PGSC0003DMT400065395 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400076140 | EnsemblPlantsGene:PGSC0003DMG400029604 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:P-loop_NTPase | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF72 |
| PFAM:PF00270 | PGSC:PGSC0003DMG400029604 | SEG:seg | SUPFAM:SSF52540 | UniParc:UPI000296E021 | UniProt:M1CW82 |
| MapMan:35.1 | : | : | : | : | : |
Description
ATP-dependent DNA helicase Q-like 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400029604]
Coordinates
chr8:-:45539927..45543543
Molecular Weight (calculated)
21847.6 Da
IEP (calculated)
6.514
GRAVY (calculated)
0.058
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MRENLKLKAL EESCESSSGP GSDNGVVSVD EWSRPFEWDS QADDIRFNVF GISKYRANQR EIINTIMSGR DVLVIMAASG GKSLCYQPPT VLRDSVALVV
101: SPLLSLILEQ VMGLAALGIP AFMLTSTTTK ENEKFIYKAL EKGGDELKIL YVTPEKISKS KIFMSKLEKC HHAGRLSLIS IDVSLQFCVF PLAVCYSS
101: SPLLSLILEQ VMGLAALGIP AFMLTSTTTK ENEKFIYKAL EKGGDELKIL YVTPEKISKS KIFMSKLEKC HHAGRLSLIS IDVSLQFCVF PLAVCYSS
001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEA SLC
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEA SLC
Arabidopsis Description
RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.