CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038422.1-P	Field mustard	nucleus	83.94	98.58
AT1G31360.3	Thale cress	nucleus	78.38	87.82
Os11t0708600-02	Rice	nucleus	46.98	74.38
KRH39703	Soybean	nucleus	60.87	72.52
Solyc08g074610.1.1	Tomato	nucleus	46.38	69.82
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	16.55	69.19
VIT_02s0087g00070.t01	Wine grape	nucleus	61.35	68.01
HORVU0Hr1G008030.1	Barley	nucleus	29.23	67.6
TraesCS4D01G133500.1	Wheat	nucleus	56.64	66.71
KXG38755	Sorghum	nucleus	56.88	66.34
TraesCS4A01G178600.5	Wheat	nucleus	56.28	66.19
TraesCS4B01G138800.1	Wheat	nucleus	55.8	65.81
GSMUA_Achr4P27590_001	Banana	nucleus	56.16	65.22
Zm00001d030366_P007	Maize	nucleus	52.9	55.87
CDY41637	Canola	nucleus	15.58	38.62
CDY66905	Canola	nucleus	21.74	29.56
CDY27743	Canola	nucleus	21.5	29.23
CDY64039	Canola	nucleus	21.38	24.69
CDY40476	Canola	nucleus	30.31	22.29
CDY12873	Canola	nucleus	30.31	22.23
CDY34669	Canola	nucleus	30.07	21.48
CDY34859	Canola	nucleus	29.35	21.39
CDY20972	Canola	nucleus	29.83	20.88
CDY20595	Canola	nucleus	29.83	20.84
CDY03955	Canola	nucleus	18.84	16.94
CDX80626	Canola	golgi, mitochondrion	15.22	16.73
CDY15702	Canola	nucleus	18.24	15.54
CDX97959	Canola	nucleus	4.35	13.48
CDX89177	Canola	nucleus	4.35	13.48
CDX80633	Canola	nucleus	5.8	12.97
CDX80627	Canola	nucleus	5.8	12.9
CDY27742	Canola	mitochondrion	0.24	8.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:15.3.3.5.3	Gene3D:3.40.50.300	GO:A0A078FDF6	UniProt:A0A078FDF6
EnsemblPlants:CDY12420	ProteinID:CDY12420	ProteinID:CDY12420.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0032508	GO:GO:0043140	EnsemblPlantsGene:GSBRNA2T00061664001	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF00570	PFAM:PF16124	PFscan:PS50967	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR13710	PANTHER:PTHR13710:SF72	InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490
SMART:SM00956	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0004EE6B0E	InterPro:WH-like_DNA-bd_sf	SEG:seg

Description

BnaC08g09090DMediator of RNA polymerase II transcription subunit 34 [Source:Projected from Arabidopsis thaliana (AT1G31360) UniProtKB/Swiss-Prot;Acc:Q9FT73]

Coordinates

chrLK032022:-:115901..121565

Molecular Weight (calculated)

93138.0 Da

IEP (calculated)

8.075

GRAVY (calculated)

-0.351

Length

828 amino acids

Sequence
(BLAST)

001: MESEAIQDEL QSLELEIKDV QGQISALIEH QDRLYERKSE LKTLLKAVAA SVTPVASSCP DGSSAVENWS EPFEWDSRAD DIRFNIFGIS KYRANQREIV
101: NAIMAGRDVL VIMAAGGGKS LCYQLPAILR GGTTLVVSPL LSLIQDQVMG LAALGISAYM LTSTSGKENE KFVYKALEKG EDDLKILYVT PEKVSKSKRF
201: MSKLEKCHNA GRLSLISIDE AHCCSQWGHD FRPDYKNLSI LKTQFPKVPM VALTVRSFSS FYLLHPFSVM GLAALGISAY MLTSTSGKEN EKFVYKALEK
301: GEDDLKILYV TPEKVSKSKR FMSKLEKCHN AGRLSLISID EAHCCSQWGH DFRPDYKNLS ILKTQFPKVP MVALTATATQ KVQNDLIEML HIPKCVKFVS
401: SVNRPNLFYS VREKSLVGKA VVDEIAEFIR ESYSNNESGI VYCFSRKECE QIAGELRARG ISADYYHAEM DVNMREKVHM RWSKNKLQVI VGTVAFGMGI
501: NKPDVRFVIH HSLSKSMETY YQESGRAGRD GLPSECVLFF RSGDVPRQSS MVFYEYSGLQ NLYDIVRYCQ SKTKCRRSAF FRHFGEPSQD CNGMCDNCAL
601: SSEVKEVDVS DLAKLVVSMV QDMQAKDQRV TMLQLGDKLR TKHKDLSAEL KREEIEHLVI KLIVDSVLKE EFLHTPYSTN AYVTTGPLAN QLLQGRKTIK
701: TETSSRQINK KSKRSSSFSG LESKLDELRK EISAAHGSML PHTVLSTQQI GLISSQKPDS LQELESIIGK LKTDKYGDKI LEVMRHDTVS EQLVEDATKE
801: ETCKSRSSKR AKTQKNVVLL ESSEEEEA

Best Arabidopsis Sequence Match ( AT1G31360.1 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEL ESIIGKLKTE KYGDRILEEV MRHEAVSEQL VEDPTKEETC KSRLRKRAKT QKDVVLVESS
701: GEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.