CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89177	Canola	nucleus	23.5	100.0
CDX97959	Canola	nucleus	23.5	100.0
Bra031741.1-P	Field mustard	nucleus	99.65	97.42
CDY34669	Canola	nucleus	95.95	94.05
CDY20972	Canola	nucleus	89.0	85.46
CDY20595	Canola	nucleus	89.0	85.32
AT1G10930.1	Thale cress	nucleus	85.39	81.65
KRH00028	Soybean	cytosol	4.84	73.33
CDY40476	Canola	nucleus	64.35	64.92
CDY12873	Canola	nucleus	64.35	64.75
KRH44073	Soybean	nucleus	58.19	56.98
VIT_12s0035g00400.t01	Wine grape	nucleus	57.83	56.78
KRH26366	Soybean	nucleus	57.04	56.25
Solyc01g103960.2.1	Tomato	nucleus	57.31	55.17
GSMUA_Achr6P17780_001	Banana	nucleus	55.72	53.33
TraesCS2A01G304900.1	Wheat	nucleus	50.7	47.96
TraesCS2D01G303500.1	Wheat	nucleus	50.35	47.63
TraesCS2B01G321700.1	Wheat	nucleus	50.26	47.54
Zm00001d015212_P006	Maize	nucleus	49.03	47.4
Os04t0433800-01	Rice	nucleus	49.38	46.36
EES06253	Sorghum	nucleus	48.33	45.94
HORVU2Hr1G075870.8	Barley	nucleus, plastid	21.04	38.42
CDY41637	Canola	nucleus	11.27	38.32
CDY66905	Canola	nucleus	19.63	36.62
CDY27743	Canola	nucleus	19.45	36.29
CDY12420	Canola	nucleus	21.39	29.35
CDY64039	Canola	nucleus	16.2	25.66
CDY03955	Canola	nucleus	15.58	19.22
CDY15702	Canola	nucleus	15.49	18.11
CDX80626	Canola	golgi, mitochondrion	11.18	16.87
CDX80633	Canola	nucleus	4.84	14.86
CDX80627	Canola	nucleus	4.84	14.78
CDY27742	Canola	mitochondrion	0.18	8.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:13.3.6.5.3.1	Gene3D:3.40.50.300	GO:A0A078HBL0	UniProt:A0A078HBL0
EnsemblPlants:CDY34859	ProteinID:CDY34859	ProteinID:CDY34859.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0043140	GO:GO:0044237	EnsemblPlantsGene:GSBRNA2T00057422001	InterPro:HRDC-like_sf	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF00570	PFAM:PF09382	PFAM:PF16124	ScanProsite:PS00690
PFscan:PS50967	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	InterPro:RQC_domain
InterPro:RecQ_Zn-bd	SMART:SM00341	SMART:SM00487	SMART:SM00490	SMART:SM00956	SUPFAM:SSF47819
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0004EEC6DB	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

BnaA09g47850DBnaA09g47850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBL0]

Coordinates

chrLK032342:-:211618..219190

Molecular Weight (calculated)

127263.0 Da

IEP (calculated)

7.428

GRAVY (calculated)

-0.524

Length

1136 amino acids

Sequence
(BLAST)

0001: MSLSEVQKPK APQTNWSEHV KVLDGSPSSV TKHLSSNFLY ALESQKPGRC RDMAARSIAF PSVNVHTLAH PQIAKAWRAL SSLSINKTYL RPGITPPVDD
0101: SGTNGSYSAR ESSTVKVTSS TGGSFYSNNQ QNQSQMGVPG TGRYSHSFPS SVPGDDKRAA EKFSRVNDEV REPETSCAHS NGVEKPFRKS ALAAEQLESG
0201: EACLDEINDD ILQNIDVDQI LMEHYQSTST PQPSVSSFPL RTPPVDRSAS SREEEFCLPP ELCCNCSHGI KLGLCPEAPD RIQELRQERL QLKKQIQQLE
0301: NHIRDKERET SKFLSSTATP FQYETPKATN RNMDDPQTDS RAEFSEQGGY ASGSWNMPRD SSFSVDRYGL SSAPVEREQY VPRIIDVKYT EGSSDKKWSS
0401: REFSWTKKLE VSNKKVFGNH SFRPNQREII NATMSGSDVF VLMPTGGGKS LTYQLPALIC QGITLVISPL VSLIQDQIMN LLQANIPAAS LSAGMEWAEQ
0501: LKIFQELSYE HSKYKLLYVT PEKVAQSDSL LRHLDSLNSR GLLARFVIDE AHCVSQWGHD FRPDYQNLGI LKQKFPNIPV LALTATATAS VKEDVVQALG
0601: LVNCVVFRQS FNRPNLWYSV VPKTKKCLED IDKFIRENHF DECGIIYCLS RMDCEKVAEK LKEFGHKAAF YHGSIEPTQR ALVQKQWSKD EINIICATVA
0701: FGMGINKPDV RFVIHHSLPK SIEGYHQECG RAGRDGQRAS CVLYYGYGDY IRVKHMISQG GVDQSPMAGG YNRVASSARL LETNSENLHR MLRYCENEVD
0801: CRRFLQLVHF GEKFDSTNCK NTCDNCCSSQ SLIDKDVTLI TRQLVELVKQ TGERFSSSHI LEVYRGSLNQ MVKKHRHETL QFHGAGKQLS KIEVSRILHY
0901: LVTEDILVED VRKSDMYGSV SSLLKVNNAK AASLFSGSQT IMMRFPSSVK VLKTTKPAPT PAKAPVTSAD TPPEDLNLSA IMYTALRKLR TLLVKEAPDG
1001: VMAYHIFGNA TLQQISKKIP RTKEELLEIN GLGKAKVTKY GDRLLETIET TVNEYYGTSN KDSMISPDTG KRRRDENTSP NVADDDDDFA EMSIQSCKKT
1101: ARNKSNEIGM VVEKLDFDFE DEDGSEIRPE GRVLPW

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.