Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d015212_P006 Maize nucleus 86.95 88.43
TraesCS2A01G304900.1 Wheat nucleus 67.78 67.44
TraesCS2B01G321700.1 Wheat nucleus 67.7 67.36
TraesCS2D01G303500.1 Wheat nucleus 67.62 67.28
Os04t0433800-01 Rice nucleus 68.03 67.19
HORVU2Hr1G075870.8 Barley nucleus, plastid 32.47 62.38
KRH00028 Soybean cytosol 3.68 58.67
KRH44073 Soybean nucleus 50.46 51.98
GSMUA_Achr6P17780_001 Banana nucleus 51.46 51.81
KRH26366 Soybean nucleus 49.71 51.56
VIT_12s0035g00400.t01 Wine grape nucleus 48.95 50.56
Solyc01g103960.2.1 Tomato nucleus 48.79 49.41
CDY34669 Canola nucleus 47.11 48.58
Bra031741.1-P Field mustard nucleus 47.2 48.54
CDY20972 Canola nucleus 47.95 48.44
CDY34859 Canola nucleus 45.94 48.33
CDY20595 Canola nucleus 47.53 47.93
Bra018418.1-P Field mustard nucleus 47.95 47.91
AT1G10930.1 Thale cress nucleus 47.62 47.9
CDY12873 Canola nucleus 45.1 47.74
CDY40476 Canola nucleus 44.94 47.69
Bra027115.1-P Field mustard nucleus 45.94 47.37
KXG38755 Sorghum nucleus 21.59 36.34
EES10228 Sorghum nucleus 18.24 34.94
OQU81827 Sorghum cytosol, extracellular 4.02 26.82
KXG31219 Sorghum nucleus 16.57 26.33
EER97745 Sorghum nucleus 17.24 22.86
EES19033 Sorghum nucleus 13.72 18.98
EES12342 Sorghum plastid 14.81 18.32
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.10.150.80MapMan:13.3.6.5.3.1Gene3D:3.40.50.300UniProt:C5XUI1InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA/RNA_helicase_DEAH_CSInterPro:DNA_helicase_ATP-dep_RecQEnsemblPlants:EES06253ProteinID:EES06253ProteinID:EES06253.2GO:GO:0000166
GO:GO:0000724GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005694
GO:GO:0005737GO:GO:0006139GO:GO:0006259GO:GO:0006260GO:GO:0006281GO:GO:0006310
GO:GO:0006950GO:GO:0006974GO:GO:0008026GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009378GO:GO:0009506GO:GO:0009628GO:GO:0009719GO:GO:0009987GO:GO:0016043
GO:GO:0016787GO:GO:0032508GO:GO:0043138GO:GO:0043140GO:GO:0044237GO:GO:0051276
GO:GO:0070417GO:GO:0071215InterPro:HRDC-like_sfInterPro:HRDC_domInterPro:Helicase_ATP-bdInterPro:Helicase_C
InterPro:IPR001650InterPro:IPR002121InterPro:IPR014001InterPro:IPR036388InterPro:P-loop_NTPasePFAM:PF00270
PFAM:PF00271PFAM:PF00570PFAM:PF09382PFAM:PF16124ScanProsite:PS00690PFscan:PS50967
PFscan:PS51192PFscan:PS51194PANTHER:PTHR13710PANTHER:PTHR13710:SF105InterPro:RQC_domainInterPro:RecQ_Zn-bd
SMART:SM00341SMART:SM00487SMART:SM00490SMART:SM00956EnsemblPlantsGene:SORBI_3004G035300SUPFAM:SSF46785
SUPFAM:SSF47819SUPFAM:SSF52540TIGRFAMs:TIGR00614UniParc:UPI0007F1BE3CInterPro:WH-like_DNA-bd_sfInterPro:WH_DNA-bd_sf
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr4:-:2841635..2850907
Molecular Weight (calculated)
133717.0 Da
IEP (calculated)
8.149
GRAVY (calculated)
-0.576
Length
1195 amino acids
Sequence
(BLAST)
0001: MQANKSPRVN WPQHENAVQG FSSRDGFLSS SFLFSLPTQK PSPEAPESML SLRSSACKIQ GSERFHAPLI EKAWRSLCNT QAARKSYLRP GLSAKVKDCD
0101: RGHARTCGEG SYNTNKMATV SGNRMPSVES TSQPTERISL QNNSSHQPVG ISSSMRSYQS NHVAQEDTRA TNQYNFARTD AALHQSAPVA DNMCTYDNYD
0201: AMDDDILASI DVDRIVMEHY QATPRGSSHN MSTPPGNKCS FNGMDEANLP RELSELCSHQ CKLAFCREAM THLQEMKDEL LAVANELLDD DGELNPQHSQ
0301: ELHQRRLHLK KLVQLLEDHM TRSAQDEERQ ISHSMASTKA TQQHLPPMTP GSTFITDSNR FQSQVYIGNG PRDSDLCYSS APYSCSDNLS TPLNSVWKSY
0401: TPKVIDINYT EGSGDRKWSS TNFPWTKDLE AKNRNKFGNR SFRPNQREII NATMSGYDVF VLMPTGGGKS LTYQLPALIS VGLTLVVCPL VSLIQDQIMH
0501: LSQANIPATY LSGNLDWSEQ QEIMRDLKSC RYKLLYVTPE KIARSGALSG LLRDLDSQGH LSRIVIDEAH CVSQWGHDFR PDYKELGVLK QNFPKTPVLA
0601: LTATATARVK EDVVQALALE NCIVFKQSFN RPNLRYYLRP KTKKCVEDID MFIRENHYKE CGIIYCLSRM DCEKVSEKLR ECGHTVAHYH GSMDPVNRTR
0701: IQEDWSKDKI NIICATIAFG MGINKPDVRF VIHHSLPKSI EGYHQECGRA GRDGQPSSCL LYYQYSDYIR VRHMITQGVG EQTGAPRDLS SHEQALKTHK
0801: DNLLRMVSYC ENDVDCRRLL QLIHFGERFD PSLCAKTCDN CLKESGWVEK DVTNIARQLV DLVTMTGHSN SSTHILEVYR GSVSQNVKKQ RHDALPLHGA
0901: GKHLAKGEAA RIMRHLVTEE ILIEDVKKSD MYGSISSVLK VNHLKASDLR SGKRSVILKF PAPGKASKMG NLDTSLFPQI NKTVQQQSEV DEKLASILYE
1001: ALLTLRRQIM EECSEGCHAY HIFKTDTLKE MSIRVPRTKE ELLDINGIGK TKLKKYGDRV LATIEDFLSK HPNPRRNISG SGGKEHSEAA KKRRGSTASS
1101: AVSCGDDDFE EPTGQSKKRA AKTRTVSDAA SMVHGARCID ADLDGPEVVD VDEHCSVPKP VASGRVLPKW APAKAKSKGS SVPPSNLFHE FGYAK
Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)
0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW
Arabidopsis Description
RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.