Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12873 | Canola | nucleus | 95.34 | 97.87 |
| CDY40476 | Canola | nucleus | 93.1 | 95.83 |
| KRH00028 | Soybean | cytosol | 4.49 | 69.33 |
| Bra031741.1-P | Field mustard | nucleus | 67.13 | 66.95 |
| Bra018418.1-P | Field mustard | nucleus | 67.82 | 65.72 |
| VIT_12s0035g00400.t01 | Wine grape | nucleus | 54.36 | 54.45 |
| KRH26366 | Soybean | nucleus | 53.84 | 54.17 |
| KRH44073 | Soybean | nucleus | 54.18 | 54.14 |
| Solyc01g103960.2.1 | Tomato | nucleus | 53.49 | 52.54 |
| GSMUA_Achr6P17780_001 | Banana | nucleus | 50.65 | 49.45 |
| Zm00001d015212_P006 | Maize | nucleus | 48.32 | 47.66 |
| TraesCS2A01G304900.1 | Wheat | nucleus | 48.66 | 46.96 |
| TraesCS2B01G321700.1 | Wheat | nucleus | 48.32 | 46.63 |
| TraesCS2D01G303500.1 | Wheat | nucleus | 48.32 | 46.63 |
| EES06253 | Sorghum | nucleus | 47.37 | 45.94 |
| Os04t0433800-01 | Rice | nucleus | 47.37 | 45.37 |
| HORVU2Hr1G075870.8 | Barley | nucleus, plastid | 21.83 | 40.68 |
| Bra038422.1-P | Field mustard | nucleus | 21.57 | 35.46 |
| Bra039413.1-P | Field mustard | nucleus | 18.03 | 34.26 |
| Bra010520.1-P | Field mustard | nucleus | 15.96 | 25.8 |
| Bra009948.1-P | Field mustard | nucleus | 14.58 | 18.35 |
| Bra030065.1-P | Field mustard | nucleus | 15.36 | 18.31 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.150.80 | MapMan:13.3.6.5.3.1 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra027115 | EnsemblPlants:Bra027115.1 |
| EnsemblPlants:Bra027115.1-P | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0006281 |
| GO:GO:0006310 | GO:GO:0006950 | GO:GO:0008026 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | GO:GO:0043140 | GO:GO:0044237 |
| InterPro:HRDC-like_sf | InterPro:HRDC_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR002121 |
| InterPro:IPR014001 | InterPro:IPR036388 | UniProt:M4EEA3 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00570 | PFAM:PF09382 | PFAM:PF16124 | ScanProsite:PS00690 | PFscan:PS50967 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF105 | InterPro:RQC_domain | InterPro:RecQ_Zn-bd | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00956 | SUPFAM:SSF47819 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 | UniParc:UPI0002542661 |
| InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
AT1G60930 (E=0.0) RECQL4B, ATRECQ4B | ATRECQ4B (ARABIDOPSIS RECQ HELICASE L4B); ATP binding / ATP-dependent helicase/ DNA helicase/ catalytic/ helicase/ nucleic acid binding / nucleotide binding
Coordinates
chrA09:+:8574241..8580983
Molecular Weight (calculated)
129544.0 Da
IEP (calculated)
8.344
GRAVY (calculated)
-0.469
Length
1159 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVVVTRDDRL AGALPHVQPM SAANKMCGSH LPEAQKSRVH LPQTNWLKHA NAFECIPSSN NFLSSSMLYS LESQKPSRSR ETASRPIYNI IPVDVQTLAH
0101: QHISKAWCAL ANLSINNTYL RPGITPAIDD INTNCSFSTR GRSTAKVTSN TDGSFFAHNH QEDSQKRIRG TATSFDRFSS SSPGDGKLIS GKVPRVYNEV
0201: RDSVTGCING MEVPPIRNLA HPARQVEVIE IDDDDILKSI DVEKIVMEHY HSTCTHQPSV NIFASRGEEN PCLPPELCSN YSHGVKLGLC LQAPSHVEQM
0301: KDALLAVSNE LLDDSTDLSP GHFEQLCQER LLLKKQIQQL EILIQDKEKK SSGCLASRPT RNIQYETPQT TNRKADYAHA DSRVHVTEQG RYVSDNWNMP
0401: RDYLCSEDRS GLSSGPIERE RCVPEIIDVT YTDGSNDKKW SSRDFPWTKN LEVNNKRVFG NHSFRPNQRE IINATMSGCD VFVLMPTGGG KSLTYQLPAL
0501: ICAGITLVIS PLVSLIQDQI MNLLQANIHA ASLSAGMDWT QQLDILRELS SENSKYRLLY VTPEKVAKSD SLLRHLESLN SHSLLARFVI DEAHCVSQWG
0601: HDFRPDYQGL GILKKKFPKI PMLALTATAT ASVKEDVVQA LGLVNTVVFR QSFNRPNLWY SVVPKTNKCL EDIDQFIKKN HFDECGIIYC LSKMDCEKVT
0701: ETLRKFGHKA AFYHGSMDPG KRAFVQKKWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYYQE CGRAGRDGQR SSCVLYYCYS DYIRVKHMIS
0801: QGGPGQSTMT TGYNRIASSG RTLESNTDNL LRMVSYCENE VDCRRFLQLV HLGENFDSTN CKNTCDNCSS SKTLIEKDVT LIGRQLVELV KLTGERFSSA
0901: HIVELYRGSL NQTVKKHRHE TLHLHGAGKH LSKSEASRIL HYLVTKDILT EYVKKSDLYG SVSSLLKVNR SKAASILSGG QTIEMRFPSA VKAVKPSKQG
1001: PTPARVALKQ TTLPMAPAPP QDSILSDTLV KALKNLRADI VKESSDAVMS YHIFGNPTLQ QISKRLPRTK EELLDIHGLG KAKVSKYGDR LLETIESTIN
1101: NHYGTNKNEG TGSGKRRRDE NTNPIVVDND DDDPDWTPSQ QSYKKAYAVR GQTSEEAIC
0101: QHISKAWCAL ANLSINNTYL RPGITPAIDD INTNCSFSTR GRSTAKVTSN TDGSFFAHNH QEDSQKRIRG TATSFDRFSS SSPGDGKLIS GKVPRVYNEV
0201: RDSVTGCING MEVPPIRNLA HPARQVEVIE IDDDDILKSI DVEKIVMEHY HSTCTHQPSV NIFASRGEEN PCLPPELCSN YSHGVKLGLC LQAPSHVEQM
0301: KDALLAVSNE LLDDSTDLSP GHFEQLCQER LLLKKQIQQL EILIQDKEKK SSGCLASRPT RNIQYETPQT TNRKADYAHA DSRVHVTEQG RYVSDNWNMP
0401: RDYLCSEDRS GLSSGPIERE RCVPEIIDVT YTDGSNDKKW SSRDFPWTKN LEVNNKRVFG NHSFRPNQRE IINATMSGCD VFVLMPTGGG KSLTYQLPAL
0501: ICAGITLVIS PLVSLIQDQI MNLLQANIHA ASLSAGMDWT QQLDILRELS SENSKYRLLY VTPEKVAKSD SLLRHLESLN SHSLLARFVI DEAHCVSQWG
0601: HDFRPDYQGL GILKKKFPKI PMLALTATAT ASVKEDVVQA LGLVNTVVFR QSFNRPNLWY SVVPKTNKCL EDIDQFIKKN HFDECGIIYC LSKMDCEKVT
0701: ETLRKFGHKA AFYHGSMDPG KRAFVQKKWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYYQE CGRAGRDGQR SSCVLYYCYS DYIRVKHMIS
0801: QGGPGQSTMT TGYNRIASSG RTLESNTDNL LRMVSYCENE VDCRRFLQLV HLGENFDSTN CKNTCDNCSS SKTLIEKDVT LIGRQLVELV KLTGERFSSA
0901: HIVELYRGSL NQTVKKHRHE TLHLHGAGKH LSKSEASRIL HYLVTKDILT EYVKKSDLYG SVSSLLKVNR SKAASILSGG QTIEMRFPSA VKAVKPSKQG
1001: PTPARVALKQ TTLPMAPAPP QDSILSDTLV KALKNLRADI VKESSDAVMS YHIFGNPTLQ QISKRLPRTK EELLDIHGLG KAKVSKYGDR LLETIESTIN
1101: NHYGTNKNEG TGSGKRRRDE NTNPIVVDND DDDPDWTPSQ QSYKKAYAVR GQTSEEAIC
0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW
Arabidopsis Description
RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.