Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G303500.1 | Wheat | nucleus | 69.42 | 69.94 |
| TraesCS2A01G304900.1 | Wheat | nucleus | 69.26 | 69.78 |
| TraesCS2B01G321700.1 | Wheat | nucleus | 69.17 | 69.69 |
| EES06253 | Sorghum | nucleus | 67.19 | 68.03 |
| Zm00001d015212_P006 | Maize | nucleus | 65.45 | 67.4 |
| KRH00028 | Soybean | cytosol | 4.13 | 66.67 |
| HORVU2Hr1G075870.8 | Barley | nucleus, plastid | 33.55 | 65.27 |
| GSMUA_Achr6P17780_001 | Banana | nucleus | 52.15 | 53.16 |
| KRH44073 | Soybean | nucleus | 50.74 | 52.93 |
| KRH26366 | Soybean | nucleus | 50.08 | 52.6 |
| Solyc01g103960.2.1 | Tomato | nucleus | 49.92 | 51.19 |
| VIT_12s0035g00400.t01 | Wine grape | nucleus | 48.84 | 51.08 |
| Bra031741.1-P | Field mustard | nucleus | 47.52 | 49.48 |
| CDY34859 | Canola | nucleus | 46.36 | 49.38 |
| CDY34669 | Canola | nucleus | 47.27 | 49.35 |
| AT1G10930.1 | Thale cress | nucleus | 48.35 | 49.24 |
| CDY20972 | Canola | nucleus | 47.44 | 48.52 |
| CDY20595 | Canola | nucleus | 47.36 | 48.35 |
| Bra018418.1-P | Field mustard | nucleus | 47.44 | 47.99 |
| CDY40476 | Canola | nucleus | 44.63 | 47.96 |
| CDY12873 | Canola | nucleus | 44.55 | 47.74 |
| Bra027115.1-P | Field mustard | nucleus | 45.37 | 47.37 |
| Os11t0708600-02 | Rice | nucleus | 18.51 | 42.83 |
| Os02t0780800-01 | Rice | cytosol | 10.66 | 40.06 |
| Os11t0672700-01 | Rice | nucleus | 17.93 | 36.9 |
| Os07t0681600-01 | Rice | nucleus | 15.7 | 21.44 |
| Os04t0486800-01 | Rice | nucleus | 13.8 | 18.03 |
| Os05t0150600-02 | Rice | nucleus | 12.23 | 17.54 |
Protein Annotations
Description
RecQ like protein 4, Mediator 34_1Similar to RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding. (Os04t0433800-01)
Coordinates
chr4:-:21547173..21558299
Molecular Weight (calculated)
135857.0 Da
IEP (calculated)
7.808
GRAVY (calculated)
-0.536
Length
1210 amino acids
Sequence
(BLAST)
(BLAST)
0001: SSSRGHQEPT FNRFACVNCC HGGCKGEIAS PLGPPAMIKP RVNWSDHANA VQSSCIKDEF LSSSFLFSLP TQRPNQEADC TGMLPLRSAA CRIQGLERLQ
0101: APSIEKAWRS LRNTQVARKN YLRPGLSGKV KDCDSDHAHT YGTSSSYNVN KMDSVSRNRN PTQESMHQTT ESGTMEKNSS HLPAGTKSCT RTYLNNHVVQ
0201: ADTITTTNQS LARTGPELFK TAPFIDNMCD DAKLDAMDED ELLASIDVDR IVMEHYQATN TPRGSSKSPL EKCNFNGFDE NNLPQELSIM CDHGSKLAFC
0301: PEAKSHLLEM KDNLLAISHE LIDGQLSPQQ SDDLHQKRAL LKKQIELLGE YTARLTQDEE RQQSHSMAST TAHQGHHPTS ILSSSFVKDT NIFQSPIYTR
0401: NEPGESGLCF SSAPYSYMDG LSMPLPSVQR DYTPRAIDIS YTEGSGDKQW SSTHFAWTKE LEANNKRVFG NRSFRPNQRE IINATMSGND VFVLMPTGGG
0501: KSLTYQLPAL ICNGVTLVVS PLVSLIQDQI MHLLQANISA AYLSASMEWS EQQEILRELM SPTCTYKLLY VTPEKIAKSD ALLRQLENLY SRGHLSRIVI
0601: DEAHCVSQWG HDFRPDYQHL GILKQKFPQT PVLALTATAT ASVKEDVVQV LGLANCIIFR QSFNRPNLRY FVWPKTKKCL EDIHNFIHAN HNKECGIIYC
0701: LSRMDCEKVA AKLREYGHTA SHYHGSMDPE DRANIQKQWS KDRINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDSQL STCVLFYNYS
0801: DYIRLKHMVT QGFAEQGTSA PRGGSSQEQA LETHKENLLR MVSYCENDVD CRRLLQLIHF GEMFNPSCCA KTCDNCLKEL RWVEKDVTNI ARQLVDLVMM
0901: TKQTYSTTHI LEVYRGSVNQ NVKKHRHDTL SLHGAGKHLA KGEAARILRH LVIEEILIED VKKSENYGSV SSVLKTNHKK SGDLLSGKHN VVLKFPTPEK
1001: APKMGVLDES SVPRINKTNQ QSQVDGSLAA ELYEALQCLR TQIMDENPQL LAYHIFKNET LKEISNRMPR TKEELVEING IGKNKLNKYG DRVLATIEDF
1101: LARYPNATRK TSSGGSNEHS EAVKKRRGFS VTNTSTNCDD FEERTVQSKK RAAKTRTRQE ISDAASIVQD VRYIDLELDG CEQVNEVPYS VQKPVASGRV
1201: LPAWQSARIA
0101: APSIEKAWRS LRNTQVARKN YLRPGLSGKV KDCDSDHAHT YGTSSSYNVN KMDSVSRNRN PTQESMHQTT ESGTMEKNSS HLPAGTKSCT RTYLNNHVVQ
0201: ADTITTTNQS LARTGPELFK TAPFIDNMCD DAKLDAMDED ELLASIDVDR IVMEHYQATN TPRGSSKSPL EKCNFNGFDE NNLPQELSIM CDHGSKLAFC
0301: PEAKSHLLEM KDNLLAISHE LIDGQLSPQQ SDDLHQKRAL LKKQIELLGE YTARLTQDEE RQQSHSMAST TAHQGHHPTS ILSSSFVKDT NIFQSPIYTR
0401: NEPGESGLCF SSAPYSYMDG LSMPLPSVQR DYTPRAIDIS YTEGSGDKQW SSTHFAWTKE LEANNKRVFG NRSFRPNQRE IINATMSGND VFVLMPTGGG
0501: KSLTYQLPAL ICNGVTLVVS PLVSLIQDQI MHLLQANISA AYLSASMEWS EQQEILRELM SPTCTYKLLY VTPEKIAKSD ALLRQLENLY SRGHLSRIVI
0601: DEAHCVSQWG HDFRPDYQHL GILKQKFPQT PVLALTATAT ASVKEDVVQV LGLANCIIFR QSFNRPNLRY FVWPKTKKCL EDIHNFIHAN HNKECGIIYC
0701: LSRMDCEKVA AKLREYGHTA SHYHGSMDPE DRANIQKQWS KDRINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDSQL STCVLFYNYS
0801: DYIRLKHMVT QGFAEQGTSA PRGGSSQEQA LETHKENLLR MVSYCENDVD CRRLLQLIHF GEMFNPSCCA KTCDNCLKEL RWVEKDVTNI ARQLVDLVMM
0901: TKQTYSTTHI LEVYRGSVNQ NVKKHRHDTL SLHGAGKHLA KGEAARILRH LVIEEILIED VKKSENYGSV SSVLKTNHKK SGDLLSGKHN VVLKFPTPEK
1001: APKMGVLDES SVPRINKTNQ QSQVDGSLAA ELYEALQCLR TQIMDENPQL LAYHIFKNET LKEISNRMPR TKEELVEING IGKNKLNKYG DRVLATIEDF
1101: LARYPNATRK TSSGGSNEHS EAVKKRRGFS VTNTSTNCDD FEERTVQSKK RAAKTRTRQE ISDAASIVQD VRYIDLELDG CEQVNEVPYS VQKPVASGRV
1201: LPAWQSARIA
0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW
Arabidopsis Description
RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.