Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
16730655
nucleus: 16730655 |
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G002110.1 | Barley | vacuole | 12.87 | 84.44 |
| EER97745 | Sorghum | nucleus | 77.31 | 76.03 |
| TraesCS2B01G120600.1 | Wheat | nucleus | 75.96 | 75.36 |
| TraesCS2A01G103300.1 | Wheat | nucleus | 75.85 | 75.25 |
| TraesCS2D01G102800.1 | Wheat | nucleus | 75.73 | 75.14 |
| Solyc09g018710.2.1 | Tomato | cytosol | 29.68 | 64.15 |
| VIT_06s0004g08420.t01 | Wine grape | nucleus | 36.57 | 59.34 |
| KRH30702 | Soybean | nucleus | 52.6 | 53.5 |
| KRG98073 | Soybean | nucleus | 55.19 | 53.15 |
| GSMUA_Achr10P... | Banana | nucleus | 53.05 | 50.48 |
| Os02t0780800-01 | Rice | cytosol | 13.54 | 37.27 |
| Os11t0708600-02 | Rice | nucleus | 18.85 | 31.93 |
| Os11t0672700-01 | Rice | nucleus | 17.04 | 25.68 |
| Os05t0150600-02 | Rice | nucleus | 18.4 | 19.31 |
| Os04t0486800-01 | Rice | nucleus | 16.7 | 15.98 |
| Os04t0433800-01 | Rice | nucleus | 21.44 | 15.7 |
Protein Annotations
Description
DNA helicase, ATP-dependent, RecQ type domain containing protein. (Os07t0681600-01)
Coordinates
chr7:+:28901514..28908685
Molecular Weight (calculated)
98245.0 Da
IEP (calculated)
7.115
GRAVY (calculated)
-0.216
Length
886 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAALKTYFG FSGFRSYQRE IIQKVLEGRD CLVVMATGSG KSICYQIPPL VTKKTAVVVS PLLSLMQDQV MSLKQHGVKS EYLGSTQTDI SVSGQAEKGA
101: FDVLYMTPEK AVSLPSRFWS NLQAAGICLL AVDEAHCISE WGHDFRTEYK QLHMLRDLLV GVPFVALTAT ATQRVRGDIA TSLTLRIPHI VVGSFDRPNL
201: FYGVKSCNRS MAFINELVKD VSKNCTVGGS TIIYCTTIRE TEQVHEALVA AGIKSSIYHG RMGNKAREES HRSFVRDEVL VMVATIAFGM GIDKPDVRCV
301: IHYGCPKSLE SYYQESGRCG RDGLPSVCWL YYQRSDFMKS DFYCAEAKSQ THRKAIMESF MAAQKYCLLA TCHRKFLLQY FGEDRTTDCG NCENCTRTKN
401: ERDLSKESFL LLSCIKSCGG RWGLNLPIDV LRGSRVKKIV ENNFDKLPLH GRGKDYPPNW WKALGGLLLA HDYLKETVHD TFRSISVSPN GYKFLSTADK
501: GDGASLFLQL TAEMIELEGH GGSQCKEEGL NPLGPSESEK ISEDELKIYQ VLLNVRMQLA QDIGTAPYAI CGDQTLRNFA KFRPSTIARL ANIDGVNQHF
601: ISHYGSIFIQ NITQLAKELN LPVDDLSAVE SIPAAPKPTQ NNLPRSLGGA KFCSWELWQK MKFSFQKVAH YRRAVPIKEK TVISYILDAA RDGCEMDWSR
701: FCEEVGLTHE IASQIRLAIT KLGSHEKLKP IKDELPENVT YEMIQTFLAI EGLGLSDQVF GTVPTDGIQS KTSEAPKTTS NGGEVGADVC DASPLTRRGQ
801: TDGSLICGDE PASKLQKIDG QGVNSTAAIG ATEDAILELV EGRNGVSLED VVKHFNGSKR ECVVEMLDNL EGNFLVYKKN GCYMIM
101: FDVLYMTPEK AVSLPSRFWS NLQAAGICLL AVDEAHCISE WGHDFRTEYK QLHMLRDLLV GVPFVALTAT ATQRVRGDIA TSLTLRIPHI VVGSFDRPNL
201: FYGVKSCNRS MAFINELVKD VSKNCTVGGS TIIYCTTIRE TEQVHEALVA AGIKSSIYHG RMGNKAREES HRSFVRDEVL VMVATIAFGM GIDKPDVRCV
301: IHYGCPKSLE SYYQESGRCG RDGLPSVCWL YYQRSDFMKS DFYCAEAKSQ THRKAIMESF MAAQKYCLLA TCHRKFLLQY FGEDRTTDCG NCENCTRTKN
401: ERDLSKESFL LLSCIKSCGG RWGLNLPIDV LRGSRVKKIV ENNFDKLPLH GRGKDYPPNW WKALGGLLLA HDYLKETVHD TFRSISVSPN GYKFLSTADK
501: GDGASLFLQL TAEMIELEGH GGSQCKEEGL NPLGPSESEK ISEDELKIYQ VLLNVRMQLA QDIGTAPYAI CGDQTLRNFA KFRPSTIARL ANIDGVNQHF
601: ISHYGSIFIQ NITQLAKELN LPVDDLSAVE SIPAAPKPTQ NNLPRSLGGA KFCSWELWQK MKFSFQKVAH YRRAVPIKEK TVISYILDAA RDGCEMDWSR
701: FCEEVGLTHE IASQIRLAIT KLGSHEKLKP IKDELPENVT YEMIQTFLAI EGLGLSDQVF GTVPTDGIQS KTSEAPKTTS NGGEVGADVC DASPLTRRGQ
801: TDGSLICGDE PASKLQKIDG QGVNSTAAIG ATEDAILELV EGRNGVSLED VVKHFNGSKR ECVVEMLDNL EGNFLVYKKN GCYMIM
001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEA SLC
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEA SLC
Arabidopsis Description
RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.