Factsheet for VIT_06s0004g08420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g018710.2.1	Tomato	cytosol	41.76	55.61
HORVU0Hr1G002110.1	Barley	vacuole	12.64	51.11
KRH30702	Soybean	nucleus	71.61	44.89
KRG98073	Soybean	nucleus	71.61	42.5
GSMUA_Achr10P...	Banana	nucleus	65.02	38.13
EER97745	Sorghum	nucleus	62.45	37.85
TraesCS2A01G103300.1	Wheat	nucleus	60.81	37.18
TraesCS2B01G120600.1	Wheat	nucleus	60.81	37.18
TraesCS2D01G102800.1	Wheat	nucleus	60.26	36.84
Os07t0681600-01	Rice	nucleus	59.34	36.57
VIT_02s0087g00070.t01	Wine grape	nucleus	28.39	20.75
VIT_14s0060g01440.t01	Wine grape	nucleus	22.71	19.84
VIT_11s0016g00850.t01	Wine grape	nucleus	24.73	18.72
VIT_01s0010g02590.t01	Wine grape	mitochondrion	19.78	15.7
VIT_12s0035g00400.t01	Wine grape	nucleus	29.67	14.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	EntrezGene:100262056	wikigene:100262056	Gene3D:3.40.50.300	MapMan:35.1
ProteinID:CCB43379	ProteinID:CCB43379.1	InterPro:DNA_helicase_ATP-dep_RecQ	UniProt:F6GU63	EMBL:FN594951	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006281
GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009378	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140
GO:GO:0044237	InterPro:HRDC-like_sf	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388	EntrezGene:LOC100262056	wikigene:LOC100262056	InterPro:P-loop_NTPase
PFAM:PF00271	PFAM:PF00570	PFAM:PF09382	PFAM:PF16124	PFscan:PS50967	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF120	InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00490
SMART:SM00956	SUPFAM:SSF47819	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000210A5EB	ArrayExpress:VIT_06s0004g08420
EnsemblPlantsGene:VIT_06s0004g08420	EnsemblPlants:VIT_06s0004g08420.t01	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002275696	RefSeq:XP_002275696.2	:

Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:F6GU63]

Coordinates

chr6:+:9333864..9362205

Molecular Weight (calculated)

61693.2 Da

IEP (calculated)

8.198

GRAVY (calculated)

-0.268

Length

546 amino acids

Sequence
(BLAST)

001: MALKQRGIRA EFLASAQTDP TVHKNAESGT FHVLFMTPEK ACSIPGSFWS KLLKVGICLF AVDEAHCISE WGHDFRMEYK QLDKLRAILL DVPFVGLTAT
101: ATKKVRMDII NSLKMRDPNV FIGSFDRKNL FYGVKSFIRN SQFMDEFVGE ISKFVASSDS TIIYCTTIKD VEQIYKSLQE AGIKAGIYHG QMANSAREES
201: HRIFIRDEVH VMVATIAFGM GIDKPNIRHV IHYGCPKSLE SYYQESGRCG RDGIASVCWL YYNRGDFMKA DFYCGEATGN QRRAIMDSLV AAQNYCLQTT
301: CRRKFLLEYF GEKFESDKCG NCDNCTISKR ECDMSREAFL LIACINSCRG HWGLNMPIDI LRGSRSKRIL DAKFDKLPLH GLGKDHSSNW WKALAYQLIS
401: YGTISERLAL KNFSYLMESV KDVYKTVSVS QKGAQFLSSS TPAHQPKLVL QVTNEMVDDE EHEGTSGKFG ELKGLATFEY EGFSETEGQL YHMLLDERMK
501: FARGIGTAPY AICGNETIKK IALIRPSTKA RLANIDGVNQ ANEKMY

Best Arabidopsis Sequence Match ( AT1G31360.2 )
(BLAST)

001: MLRGGTTLVV SPLLSLIQDQ VMGLAALGIS AYMLTSTSGK ENEKFVYKAL EKGEDDLKIL YVTPEKVSKS KRFMSKLEKC HNAGRLSLIS IDEAHCCSQW
101: GHDFRPDYKN LSILKTQFPK VPMVALTATA TQKVQNDLIE MLHIPKCVKF VSSVNRPNLF YSVREKSAVG KLVVDEIAEF IRESYSNNES GIVYCFSRKE
201: CEQIAGDLRE RGISADYYHA DMDANMREKV HMRWSKNKLQ VIVGTVAFGM GINKPDVRFV IHHSLSKSME TYYQESGRAG RDGLPSECIL FFRSADVPRQ
301: SSMVFYEYSG LQNLYDIVRY CQSKTKCRRS AFFRHFGEPS QDCNGMCDNC ALSSEVKEVD VSDLSKLVVS MVQETQAKDQ RVTMLQLGDK LRNKHKDLIA
401: ELKRDEVEHL VIKLIVDSVL KEEFQHTPYS TNAYVTMGPL ANQLLQGRKT IKMETSSRQT KKLKRSITFS GLELKLDELR KEISAADGSI LPHTVLSTQQ
501: IGSISSQKPV SLQELESIIG KLKTEKYGDR ILEEVMRHEA VSEQLVEDPT KEETCKSRLR KRAKTQKDVV LVESSGEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.