Factsheet for VIT_01s0010g02590.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	18.31	62.38
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	43.02	60.78
KRH42637	Soybean	nucleus	70.93	53.98
OQU81827	Sorghum	cytosol, extracellular	13.23	50.84
AT1G27880.1	Thale cress	nucleus	66.28	50.05
CDY03955	Canola	nucleus	67.01	50.05
Solyc05g014690.1.1	Tomato	nucleus	70.49	48.4
Bra030065.1-P	Field mustard	nucleus	67.01	47.43
CDY15702	Canola	nucleus	67.01	47.43
Os04t0486800-01	Rice	nucleus	62.06	46.11
TraesCS2B01G363700.1	Wheat	nucleus	61.92	45.91
TraesCS2A01G345300.1	Wheat	nucleus	61.34	45.28
TraesCS2D01G344000.2	Wheat	nucleus	61.77	45.26
Zm00001d025722_P002	Maize	nucleus	60.61	44.94
HORVU2Hr1G084110.2	Barley	plastid	61.34	44.47
EES12342	Sorghum	plastid	62.21	44.31
VIT_14s0060g01440.t01	Wine grape	nucleus	20.64	22.72
VIT_11s0016g00850.t01	Wine grape	nucleus	21.37	20.39
VIT_02s0087g00070.t01	Wine grape	nucleus	21.51	19.81
VIT_06s0004g08420.t01	Wine grape	nucleus	15.7	19.78
VIT_12s0035g00400.t01	Wine grape	nucleus	24.13	14.35

Protein Annotations

EntrezGene:100256355	wikigene:100256355	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI27562	ProteinID:CBI27562.3
UniProt:D7TAN9	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	EMBL:FN595754	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006284	GO:GO:0006310
GO:GO:0006950	GO:GO:0007154	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009378	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0009991	GO:GO:0016043
GO:GO:0016787	GO:GO:0032508	GO:GO:0042631	GO:GO:0043140	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	EntrezGene:LOC100256355	wikigene:LOC100256355	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF108
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0001BE2B08	ArrayExpress:VIT_01s0010g02590
EnsemblPlantsGene:VIT_01s0010g02590	EnsemblPlants:VIT_01s0010g02590.t01	RefSeq:XP_002266225	RefSeq:XP_002266225.1	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:19639325..19647921

Molecular Weight (calculated)

76125.5 Da

IEP (calculated)

7.381

GRAVY (calculated)

-0.005

Length

688 amino acids

Sequence
(BLAST)

001: MAMGESLQTR ARERVTMHRQ GRVKFDGELI EAAALEVQNE ASDEKLVKLL GLTHGYDSFR DGQLEAIRMV LEGKSTMLVL PTGAGKSLCY QLPALVLPGI
101: TLVVSPLVAL MIDQLKQLPP MIPGGLLSSS QSAEETSETL RQLREGTIKV LFVSPERFLN AEFLSIVSAG PPISLVVVDE AHCVSEWSHN FRPSYMRLRA
201: SLLHAVLNAK CILAMTATAT SRTLHAVMHA LEIPAANLIQ KAQLRDNLQL SVSLSKNRQS PPFIEVQSII IYCKFQSETD SISKYLCDNN ISAKSYHSGI
301: PAKDRSRTQE LFCSNKIRVV VATVAFGMGL NKSDVGAVIH FSLPESLEEY VQEIGRAGRD GNLSYCHLLF DDITYFKLRS LMHSDGVDEY AVNRFLSQVF
401: SNGMGSPGKV HSIVKEAASR KFDMKEEVML TILTHLELGE VQYLSLLPPL NVTCSLNFHK TTPALLADWD IVVAAILKKS ETKQGHYVFD IPTVANSIGI
501: TTIDILNQLQ NLKLKGEITY EMKDPAYCYT IVDVPGDLCC LAAHLTKWLS EVESCKVQKL DTMFNAAVSA VELCEKKCGC LGAQHTPCLQ RKISDYFSGD
601: GNGDIPNKMD QSSPFLRADI KVFLQSNSQV KFTPRAVARI MHGIASPAYP SATWSRTHFW GRYMQMDFQV VMKAAKAELM NFVGKDAL

Best Arabidopsis Sequence Match ( AT1G27880.1 )
(BLAST)

001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T

Arabidopsis Description

RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.