Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH00028 | Soybean | cytosol | 4.75 | 73.33 |
| KRH44073 | Soybean | nucleus | 63.18 | 63.02 |
| KRH26366 | Soybean | nucleus | 62.23 | 62.5 |
| Solyc01g103960.2.1 | Tomato | nucleus | 61.71 | 60.51 |
| GSMUA_Achr6P17780_001 | Banana | nucleus | 62.06 | 60.49 |
| CDY34669 | Canola | nucleus | 58.25 | 58.15 |
| AT1G10930.1 | Thale cress | nucleus | 59.64 | 58.08 |
| Bra031741.1-P | Field mustard | nucleus | 58.17 | 57.92 |
| CDY34859 | Canola | nucleus | 56.78 | 57.83 |
| CDY20972 | Canola | nucleus | 57.99 | 56.72 |
| CDY20595 | Canola | nucleus | 57.82 | 56.46 |
| Bra018418.1-P | Field mustard | nucleus | 57.99 | 56.1 |
| Bra027115.1-P | Field mustard | nucleus | 54.45 | 54.36 |
| CDY40476 | Canola | nucleus | 52.81 | 54.26 |
| CDY12873 | Canola | nucleus | 52.9 | 54.21 |
| Zm00001d015212_P006 | Maize | nucleus | 50.48 | 49.7 |
| TraesCS2A01G304900.1 | Wheat | nucleus | 51.34 | 49.46 |
| TraesCS2D01G303500.1 | Wheat | nucleus | 51.25 | 49.38 |
| TraesCS2B01G321700.1 | Wheat | nucleus | 51.17 | 49.29 |
| EES06253 | Sorghum | nucleus | 50.56 | 48.95 |
| Os04t0433800-01 | Rice | nucleus | 51.08 | 48.84 |
| HORVU2Hr1G075870.8 | Barley | nucleus, plastid | 20.4 | 37.94 |
| VIT_14s0060g01440.t01 | Wine grape | nucleus | 18.67 | 34.56 |
| VIT_02s0087g00070.t01 | Wine grape | nucleus | 22.04 | 34.14 |
| VIT_06s0004g08420.t01 | Wine grape | nucleus | 14.0 | 29.67 |
| VIT_11s0016g00850.t01 | Wine grape | nucleus | 16.77 | 26.91 |
| VIT_01s0010g02590.t01 | Wine grape | mitochondrion | 14.35 | 24.13 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.150.80 | EntrezGene:100245652 | wikigene:100245652 | MapMan:13.3.6.5.3.1 | Gene3D:3.40.50.300 |
| ProteinID:CCB55072 | ProteinID:CCB55072.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DNA_helicase_ATP-dep_RecQ |
| UniProt:F6HK69 | EMBL:FN595990 | GO:GO:0000166 | GO:GO:0000724 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006260 | GO:GO:0006281 | GO:GO:0006310 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008026 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009378 | GO:GO:0009506 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | GO:GO:0043138 |
| GO:GO:0043140 | GO:GO:0044237 | GO:GO:0051276 | GO:GO:0070417 | GO:GO:0071215 | InterPro:HRDC-like_sf |
| InterPro:HRDC_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR002121 | InterPro:IPR014001 |
| InterPro:IPR036388 | EntrezGene:LOC100245652 | wikigene:LOC100245652 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00570 | PFAM:PF09382 | PFAM:PF16124 | ScanProsite:PS00690 | PFscan:PS50967 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF105 | InterPro:RQC_domain | InterPro:RecQ_Zn-bd | SMART:SM00341 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00956 | SUPFAM:SSF47819 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 |
| UniParc:UPI0002108DEB | ArrayExpress:VIT_12s0035g00400 | EnsemblPlantsGene:VIT_12s0035g00400 | EnsemblPlants:VIT_12s0035g00400.t01 | unigene:Vvi.20052 | InterPro:WH-like_DNA-bd_sf |
| RefSeq:XP_002265586 | RefSeq:XP_002265586.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:+:19728446..19746047
Molecular Weight (calculated)
129864.0 Da
IEP (calculated)
7.418
GRAVY (calculated)
-0.473
Length
1157 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAPLLKDASV EFPRDVRKCN LQSSHNTNNQ YLEHNLPHQN LGETNSSYSE TASCRGNSFR SGSACAENAG REGGQNETKP SMLYNSHIQV VGQSSGTCNV
0101: HTGQVKELVG AFPNGTDDDD ILEDIDVDQI VMEHYQSTCT PQPSISKLPP VTPTLSTVNI AKHEETFLPL ELCSNCSHGF KLGLCPEAAN HLQELKDMLI
0201: VISNELLDNV DLTSVQVEKL RQDRLYLNKQ IQQLEIHLHS VSVDEERKNS NFSASTTTPW AQFQTPPATA VGIDPMRFDA QVHLRNEPGN YEKWNTSSVS
0301: FSSIDRFGVT PYPLEREPYI PKLIEVNYIE GSSDKKWSSG NFPWTKKLEA NNKKVFGNHS FRPNQREVIN ATMSGYDVFV LMPTGGGKSL TYQLPALISP
0401: GITLVISPLV SLIQDQIMHL LQANIPAAYL SASMEWNEQQ EILRELSSCK YKLLYATPEK VAKSDVLMRN LDNLHARELL SRIVIDEAHC VSQWGHDFRP
0501: DYQGLGILKQ KFPNTPVLAL TATATASVKE DVVQALGLVN CIIFRQSFNR PNLWYSVLPK TRKCLDDIDK FIRENHFDEC GIIYCLSRLD CEKVAERLQE
0601: CGHKAAFYHG SMDPARRAFV QKQWSKDEIN IICATVAFGM GINKPDVRFV IHHSLPKSIE GYHQECGRAG RDGQRSSCVL YYSYSDYIRV KHMITQGVVE
0701: QSPLASGQNR SNMASSGRIL ETNTENLLRM VSYCENDVDC RRLLQLVHFG EKFDSAHCKK TCDNCLKIKS FVEKDVTEIA KQLVELVKLT REQFSSSHIL
0801: EVYRGSLSQY VKKHRHETLG LHAAGKHLAK GEASRILRHL VTEDFLMEDV KKSDIYGSVS SVLKVNESKV YKLFSGGQKI ILRFPSSAKS SKLSNFEATP
0901: AKGSLTSGKL SPPRIETPAH LPEVDLNLSA KLYSALRILR TVLVKEAGEG VMAYHIFGNA TLQQISKRIP RTKEELLEVN GIGKAKISKY GDRVLETIES
1001: TIKEYYKTDK NSSSSNDSTD TIKRRRESAK VLDANPEDDD FTKSTDRSRG RAMKRHNKGG EANNTRETDY YNQCIDDDLD FDDANCDVAI NGSAPKVDRD
1101: GARRTLPSWS TPSNKGHDQH LNMFQEYSFK GTHIKAGKMK DVGQFAVAIE FVLVFLL
0101: HTGQVKELVG AFPNGTDDDD ILEDIDVDQI VMEHYQSTCT PQPSISKLPP VTPTLSTVNI AKHEETFLPL ELCSNCSHGF KLGLCPEAAN HLQELKDMLI
0201: VISNELLDNV DLTSVQVEKL RQDRLYLNKQ IQQLEIHLHS VSVDEERKNS NFSASTTTPW AQFQTPPATA VGIDPMRFDA QVHLRNEPGN YEKWNTSSVS
0301: FSSIDRFGVT PYPLEREPYI PKLIEVNYIE GSSDKKWSSG NFPWTKKLEA NNKKVFGNHS FRPNQREVIN ATMSGYDVFV LMPTGGGKSL TYQLPALISP
0401: GITLVISPLV SLIQDQIMHL LQANIPAAYL SASMEWNEQQ EILRELSSCK YKLLYATPEK VAKSDVLMRN LDNLHARELL SRIVIDEAHC VSQWGHDFRP
0501: DYQGLGILKQ KFPNTPVLAL TATATASVKE DVVQALGLVN CIIFRQSFNR PNLWYSVLPK TRKCLDDIDK FIRENHFDEC GIIYCLSRLD CEKVAERLQE
0601: CGHKAAFYHG SMDPARRAFV QKQWSKDEIN IICATVAFGM GINKPDVRFV IHHSLPKSIE GYHQECGRAG RDGQRSSCVL YYSYSDYIRV KHMITQGVVE
0701: QSPLASGQNR SNMASSGRIL ETNTENLLRM VSYCENDVDC RRLLQLVHFG EKFDSAHCKK TCDNCLKIKS FVEKDVTEIA KQLVELVKLT REQFSSSHIL
0801: EVYRGSLSQY VKKHRHETLG LHAAGKHLAK GEASRILRHL VTEDFLMEDV KKSDIYGSVS SVLKVNESKV YKLFSGGQKI ILRFPSSAKS SKLSNFEATP
0901: AKGSLTSGKL SPPRIETPAH LPEVDLNLSA KLYSALRILR TVLVKEAGEG VMAYHIFGNA TLQQISKRIP RTKEELLEVN GIGKAKISKY GDRVLETIES
1001: TIKEYYKTDK NSSSSNDSTD TIKRRRESAK VLDANPEDDD FTKSTDRSRG RAMKRHNKGG EANNTRETDY YNQCIDDDLD FDDANCDVAI NGSAPKVDRD
1101: GARRTLPSWS TPSNKGHDQH LNMFQEYSFK GTHIKAGKMK DVGQFAVAIE FVLVFLL
0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW
Arabidopsis Description
RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.