Factsheet for Zm00001d015212_P006

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06253	Sorghum	nucleus	88.43	86.95
TraesCS2A01G304900.1	Wheat	nucleus	68.0	66.53
TraesCS2D01G303500.1	Wheat	nucleus	68.0	66.53
TraesCS2B01G321700.1	Wheat	nucleus	67.91	66.44
Os04t0433800-01	Rice	nucleus	67.4	65.45
HORVU2Hr1G075870.8	Barley	nucleus, plastid	33.7	63.67
KRH00028	Soybean	cytosol	4.0	62.67
GSMUA_Achr6P17780_001	Banana	nucleus	52.85	52.32
KRH44073	Soybean	nucleus	51.23	51.9
KRH26366	Soybean	nucleus	50.55	51.56
VIT_12s0035g00400.t01	Wine grape	nucleus	49.7	50.48
CDY34669	Canola	nucleus	48.68	49.35
Bra031741.1-P	Field mustard	nucleus	48.77	49.31
CDY20972	Canola	nucleus	49.62	49.28
Solyc01g103960.2.1	Tomato	nucleus	49.45	49.24
CDY34859	Canola	nucleus	47.4	49.03
AT1G10930.1	Thale cress	nucleus	49.53	48.99
CDY20595	Canola	nucleus	49.28	48.86
Bra018418.1-P	Field mustard	nucleus	49.62	48.75
CDY12873	Canola	nucleus	46.81	48.72
CDY40476	Canola	nucleus	46.47	48.49
Bra027115.1-P	Field mustard	nucleus	47.66	48.32
Zm00001d048672_P001	Maize	nucleus	18.38	34.29
Zm00001d030366_P007	Maize	nucleus	20.43	30.61
Zm00001d018287_P001	Maize	nucleus	16.34	26.05
Zm00001d010866_P004	Maize	nucleus	13.62	18.43
Zm00001d025722_P002	Maize	nucleus	14.47	18.32

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	EntrezGene:100274706	MapMan:13.3.6.5.3.1	Gene3D:3.40.50.300	UniProt:A0A1D6H058
ProteinID:AQK68326.1	ProteinID:AQK68335.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0006974	GO:GO:0008026
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009628	GO:GO:0009719
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043138	GO:GO:0043140
GO:GO:0044237	GO:GO:0051276	GO:GO:0070417	GO:GO:0071215	InterPro:HRDC-like_sf	InterPro:HRDC_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00570	PFAM:PF09382	PFAM:PF16124
ScanProsite:PS00690	PFscan:PS50967	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105
InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00341	SMART:SM00487	SMART:SM00490	SMART:SM00956
SUPFAM:SSF46785	SUPFAM:SSF47819	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0004DEA83E	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d015212	EnsemblPlants:Zm00001d015212_P006	EnsemblPlants:Zm00001d015212_T006	SEG:seg	:

Description

ATP-dependent DNA helicase Q-like 4A

Coordinates

chr5:-:79557067..79570571

Molecular Weight (calculated)

131897.0 Da

IEP (calculated)

8.376

GRAVY (calculated)

-0.602

Length

1175 amino acids

Sequence
(BLAST)

0001: MQANKPPKVN WPHHENAVQG YSSRDDFLSS SFLFSLPTQR PNPEARERML SLRSSACKIQ GPERLQAPLI EKAWRSLCNT QAACKSYLRP GLSAKARDCD
0101: RGHARTYGEG SYNTNKMSTV PGNRILSMES TGQPSERVSL QNNSSHQTVG ICSSMRSHQN NHVVQEDMRA TNQYNFARTN AALHQSMAAD NMCSYDKFDA
0201: MDDDILATID VDQIVMEHYQ ATNAPRGSAS HNMSTPPGNK CSVNGMDEAN LPRELSELCN HQCKLAFCRE AMTHLQEMKD ELLAVANELL DDDGELNPQH
0301: SQELHKRRLH LKKLVQLLED HMTRSAQDEE RQISHSMAST TSTQQHLPPM TPGSTFTMDS NRFQSQVYVG NGPRDSDLCY SPAPYSCSDN LSTPLNSVWK
0401: SYTPKVIDIN YTEGSGDRKW SSTNFPWTKE LEAKNRNKFG NHSFRPNQRE IINATMSGHD VFVLMPTGGG KSLTYQLPAL ISSGLTLVVC PLVSLIQDQI
0501: MHLSQANIPA TYLSGNLDWS EQQEIMKDLM SCRYKLLYVT PEKIAKSGAL SRLLDNLNSQ GHLSRIVIDE AHCVSQWGHD FRPDYKSLGV LKQNFPKTPV
0601: LALTATATAR VKEDVVQALA LENCIVFKQS FNRANLRYYL RPKTKKCVED IDLFIRTNHS KECGIIYCLS RMDCEKVAEK LRDCGHKVSH YHGSMDPMDR
0701: THIQKLWSKD KINIICATVA FGMGINKPDV RFVIHHSLPK SIEGYHQECG RAGRDGQPSS CVLYYQYSDY IRVRHMITQG VTEQTGAPRD LSSHEQALKT
0801: HKDNLLRMVS YCENDVDCRR LLQLIHFGEK FDPSLCARTC DNCLKESGWV EKDVTNIARQ LVELVTRTGH SHSSTYILEV YRGSMSQNVK KQRHDALALH
0901: GAGRHLAKGE AARIMRHLVT EEILNEDVKK SDMYGSISSV LKVNHLKASG LLSGKHNIVL KFPASDKASK MRNLDASLLP QTNKNVQQQS EVDVKLASML
1001: YEALLSLREQ IMEECNEGFN AYHIFKTDTL KEMSIRVPRT KEELLDINGL GKTKVKKYGD RLLATIEDFL SKHPNPRRNS GGGGGGNEHS DAAKKRRGST
1101: AISAASYGDY DFDERTGQQS KKRAAKTRTV SAHGPRCTDA DLDGPEVVEV DGELRSVRKP VAYGNGRVLP KWAPL

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.