Factsheet for Bra031741.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34859	Canola	nucleus	97.42	99.65
CDY34669	Canola	nucleus	95.78	96.03
Bra018418.1-P	Field mustard	nucleus	89.33	86.79
AT1G10930.1	Thale cress	nucleus	85.28	83.42
KRH00028	Soybean	cytosol	4.73	73.33
Bra027115.1-P	Field mustard	nucleus	66.95	67.13
KRH44073	Soybean	nucleus	58.26	58.36
VIT_12s0035g00400.t01	Wine grape	nucleus	57.92	58.17
KRH26366	Soybean	nucleus	57.06	57.55
Solyc01g103960.2.1	Tomato	nucleus	57.4	56.53
GSMUA_Achr6P17780_001	Banana	nucleus	55.85	54.68
TraesCS2A01G304900.1	Wheat	nucleus	50.77	49.13
TraesCS2D01G303500.1	Wheat	nucleus	50.43	48.79
Zm00001d015212_P006	Maize	nucleus	49.31	48.77
TraesCS2B01G321700.1	Wheat	nucleus	50.34	48.71
Os04t0433800-01	Rice	nucleus	49.48	47.52
EES06253	Sorghum	nucleus	48.54	47.2
HORVU2Hr1G075870.8	Barley	nucleus, plastid	21.77	40.68
Bra039413.1-P	Field mustard	nucleus	18.24	34.75
Bra038422.1-P	Field mustard	nucleus	21.0	34.61
Bra010520.1-P	Field mustard	nucleus	16.27	26.36
Bra009948.1-P	Field mustard	nucleus	15.06	19.0
Bra030065.1-P	Field mustard	nucleus	15.4	18.42

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:13.3.6.5.3.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra031741	EnsemblPlants:Bra031741.1
EnsemblPlants:Bra031741.1-P	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006281
GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	GO:GO:0044237
InterPro:HRDC-like_sf	InterPro:HRDC_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121
InterPro:IPR014001	InterPro:IPR036388	UniProt:M4ESG2	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF00570	PFAM:PF09382	PFAM:PF16124	ScanProsite:PS00690	PFscan:PS50967	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00341
SMART:SM00487	SMART:SM00490	SMART:SM00956	SUPFAM:SSF47819	SUPFAM:SSF52540	TIGRFAMs:TIGR00614
UniParc:UPI000254314D	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:	:

Description

AT1G10930 (E=0.0) ATSGS1, RECQ4A, ATRECQ4A | RECQ4A; ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding

Coordinates

chrA09:-:34969968..34976523

Molecular Weight (calculated)

130045.0 Da

IEP (calculated)

7.036

GRAVY (calculated)

-0.520

Length

1162 amino acids

Sequence
(BLAST)

0001: MSLSEVQKPK APQTNWSEHV KVLDGSPSSV TKHLSSNFLY ALESQKPGRC RDMAARSIAF PSVNVHTLAH PQIAKAWRAL SSLSINKTYL RPGITPPVDD
0101: SGTNGSYSAR ESSTVKVTSS TGGSFYSNNQ QNQSQMGVPG TGRYSHSFPS SVPGDDKRAA EKFSRVNDEV REPETSCAHS NGVEKPFRKS ALAAEQLESG
0201: EACLDEINDD ILQNIDVDQI LMEHYQSTST PQPSVSSFPL RTPPVDRSAS SREEEFCLPP ELCCNCSHGI KLGLCPEAST HLEQMKNTLI AISNELLDDD
0301: TDLSPDRIQE LRQERLQLKK QIQQLENHIR DKERETSKFL SSTATPFQYE TPKATNRNMD DPQTDSRAEF SEQGGYASGS WNMPRDSSFS VDRYGLSSAP
0401: VEREQYVPRI IDVKYTEGSS DKKWSSREFS WTKKLEVSNK KVFGNHSFRP NQREIINATM SGSDVFVLMP TGGGKSLTYQ LPALICQGIT LVISPLVSLI
0501: QDQIMNLLQA NIPAASLSAG MEWAEQLKIF QELSSEHSKY KLLYVTPEKV AQSDSLLRHL DSLNSRGLLA RFVIDEAHCV SQWGHDFRPD YQSLGILKQK
0601: FPNIPVLALT ATATASVKED VVQALGLVNC VVFRQSFNRP NLWYSVVPKT KKCLEDIDKF IRENHFDECG IIYCLSRMDC EKVAEKLKEF GHKAAFYHGS
0701: IEPTQRALVQ KQWSKDEINI ICATVAFGMG INKPDVRFVI HHSLPKSIEG YHQECGRAGR DGQRASCVLY YGYGDYIRVK HMISQGGVDQ SPMAGGYNRV
0801: ASSARLLETN SENLHRMLRY CENEVDCRRF LQLVHFGEKF DSTNCKNTCD NCCSSQSLID KDVTLITRQL VELVKQTGER FSSSHILEVY RGSLNQMVKK
0901: HRHETLQFHG AGKQLSKIEV SRILHYLVTE DILVEDVRKS DMYGSVSSLL KVNNAKAASL FSGSQTIMMR FPSSVKVLKT TKPAPTPAKA PVTSADTPPE
1001: DLNLSAIMYT ALRKLRTLLV KEAPDGVMAY HIFGNATLQQ ISKKIPRTKE ELLEINGLGK AKVTKYGDRL LETIESTVNE YYGTSNKDSM ISPDTGKRRR
1101: DENTSPNVAD DDDDFAEMSI QSCKKTARNK SNEIGMVVEK LDFDFEDEDG SELRPEGRVL PW

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.