Factsheet for Bra039413.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27742	Canola	mitochondrion	4.1	100.0
GSMUA_AchrUn_...	Banana	nucleus	48.2	70.0
KRH42322	Soybean	cytosol, nucleus, plastid	17.05	68.87
PGSC0003DMT400007294	Potato	nucleus	47.05	63.08
VIT_14s0060g01440.t01	Wine grape	nucleus	63.61	62.08
Os11t0672700-01	Rice	nucleus	57.05	59.18
TraesCS4D01G144400.2	Wheat	nucleus	56.07	55.07
EES10228	Sorghum	nucleus	55.9	54.65
TraesCS4A01G170100.1	Wheat	nucleus	55.57	54.59
Zm00001d048672_P001	Maize	nucleus	55.9	54.13
Solyc01g100280.2.1	Tomato	nucleus	62.3	53.98
TraesCS4B01G126600.1	Wheat	nucleus	53.77	53.33
HORVU4Hr1G032190.1	Barley	nucleus	55.25	52.57
KRH42323	Soybean	cytosol	18.69	35.4
Bra038422.1-P	Field mustard	nucleus	27.7	23.97
Bra010520.1-P	Field mustard	nucleus	25.41	21.62
Bra031741.1-P	Field mustard	nucleus	34.75	18.24
Bra027115.1-P	Field mustard	nucleus	34.26	18.03
Bra018418.1-P	Field mustard	nucleus	35.08	17.89
Bra009948.1-P	Field mustard	nucleus	25.9	17.16
Bra030065.1-P	Field mustard	nucleus	23.11	14.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra039413	EnsemblPlants:Bra039413.1	EnsemblPlants:Bra039413.1-P	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0007154
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987
GO:GO:0009991	GO:GO:0016787	GO:GO:0042631	GO:GO:0070417	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M4FE92	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF107	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000254819D	SEG:seg	:	:

Description

AT3G05740 (E=4e-287) RECQI1 | RECQI1 (Arabidopsis RecQ helicase l1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding

Coordinates

chrA05:-:23248279..23252113

Molecular Weight (calculated)

68513.7 Da

IEP (calculated)

5.470

GRAVY (calculated)

-0.395

Length

610 amino acids

Sequence
(BLAST)

001: MKGQDLELEK ARLLSLATRL GFDEESAKKC LDRFVDLYGD DGRDFITVAL CGDDFIAALA DFEEGTEEWD DVQALETEAQ GTLGEMFNRG NASDNGFETD
101: DGESSVQVHV IEDSPESKNK PDVMELDSSS DFEDDDDDED TQFKVPRGGS RSHSLRSMEY SMEDSVSTIS GRKPSVPTSG KDHETPSYEE LQALDDLEFA
201: NLVIFGNKVF RPLQHQACRA SMEKKDCFVL MPTGGGKSLC YQLPATLKAG VTIVISPLLS LIQDQIVALN LKFGVPATFL NSQQTSSQAA IVLQELRSDN
301: PSCKLLYVTP EKIAGSSSFL ETLRCLDRKG LLAGFVVDEA HCVSQWGHDF RPDYRELGCL KQNFPRVPVM ALTATATESV CQDVLKSLRI PRAPVLKMSF
401: DRTNLKYEVI NKTKEPLKQL QELLKDRFKD QSGIVYCLSK SECVDVAKFL NEKCKVKTVY YHAGMPAKQR VDVQRKWQTG EVRIVCATIA FGMGIDKADV
501: RFVIHNTLSK AIESYYQESG RAGRDGLQAQ CICLYQKKDF SRVVCMLRNG QGRNMDRFKS AMAQAKKMQQ YCELKFCSVD HSDLCMHKHN QVLWKQRRML
601: VGMSYFSDTL

Best Arabidopsis Sequence Match ( AT3G05740.1 )
(BLAST)

001: MKDQDLELEK VRLISLATKL GFDEDSAKKC LDRFVDLYGD DGRDFITVEL CGDDFLAALA DFEEGTEEWD DIQAIESEAQ GNLAEMFDKS TNPSDNGFDT
101: DDDDDDSRVE VHVIEDSPEP KKKPEIVELD SSSDLEDVET RFKVPRRSQT CSRSMDYSME DSVSTISGRK PSVQISNKDH ETPSYEELQA LDDLEFANLV
201: IFGNKVFRPL QHQACRASME RKDCFVLMPT GGGKSLCYQL PATLKAGVTI VISPLLSLIQ DQIVALNLKF GIPATFLNSQ QTSSQAAAVL QELRRDNPSC
301: KLLYVTPEKI AGSSSFLETL RCLDRKGLLA GFVVDEAHCV SQWGHDFRPD YRELGCLKQN FPRVPVMALT ATATESVCQD VLKSLRIPRA PVLKMSFDRI
401: NLKYEVIVKT KEPLKQLQEL LRDRFKDQSG IVYCLSKSEC VDVAKFLNEK CKVKTVYYHA GVPAKQRVDV QRKWQTGEVR IVCATIAFGM GIDKADVRFV
501: IHNTLSKAVE SYYQESGRAG RDGLQAQCIC LYQKKDFSRV VCMLRNGQGR NMDRFKSAMA QAKKMQQYCE LKTECRRQML LEYFGESFDR MICKSSLNPC
601: DNCERS

Arabidopsis Description

RECQL1ATP-dependent DNA helicase Q-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.