Factsheet for Bra038422.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G31360.3	Thale cress	nucleus	91.35	87.14
CDY12420	Canola	nucleus	98.58	83.94
Os11t0708600-02	Rice	nucleus	55.04	74.19
KRH39703	Soybean	nucleus	71.35	72.37
Solyc08g074610.1.1	Tomato	nucleus	54.47	69.82
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	19.43	69.19
VIT_02s0087g00070.t01	Wine grape	nucleus	71.91	67.87
HORVU0Hr1G008030.1	Barley	nucleus	34.33	67.6
TraesCS4D01G133500.1	Wheat	nucleus	66.67	66.86
TraesCS4A01G178600.5	Wheat	nucleus	66.24	66.34
KXG38755	Sorghum	nucleus	66.52	66.06
TraesCS4B01G138800.1	Wheat	nucleus	65.67	65.95
GSMUA_Achr4P27590_001	Banana	nucleus	65.96	65.22
Zm00001d030366_P007	Maize	nucleus	62.13	55.87
Bra039413.1-P	Field mustard	nucleus	23.97	27.7
Bra010520.1-P	Field mustard	nucleus	24.82	24.41
Bra027115.1-P	Field mustard	nucleus	35.46	21.57
Bra031741.1-P	Field mustard	nucleus	34.61	21.0
Bra018418.1-P	Field mustard	nucleus	34.61	20.4
Bra009948.1-P	Field mustard	nucleus	24.11	18.46
Bra030065.1-P	Field mustard	nucleus	21.28	15.43

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	MapMan:15.3.3.5.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra038422	EnsemblPlants:Bra038422.1
EnsemblPlants:Bra038422.1-P	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260
GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140
InterPro:HRDC_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001
InterPro:IPR036388	UniProt:M4FBF6	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00570
PFAM:PF09382	PFAM:PF16124	PFscan:PS50967	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710
PANTHER:PTHR13710:SF72	InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SMART:SM00956
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0002546765	InterPro:WH-like_DNA-bd_sf	:	:

Description

AT1G31360 (E=0.0) RECQL2, ATRECQ2 | RECQL2 (ARABIDOPSIS RECQ HELICASE L2); 3'-5' DNA helicase/ ATP-dependent helicase/ four-way junction helicase/ protein binding

Coordinates

chrA08:-:8877241..8881484

Molecular Weight (calculated)

79259.0 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.396

Length

705 amino acids

Sequence
(BLAST)

001: MESEAIQDEL QSLELEINDV QGQISALIEH QDRLYERKSE LKTLLKAVSA SVTPVAPSCP DGSSAVENWS EPFEWDSRAD DIRFNIFGIS KYRANQREIV
101: NVIMAGRDVL VIMAAGGGKS LCYQLPAILR GGTTLVVSPL LSLIQDQVMG LAALGISAYM LTSTSGKENE KFVYKALEKG EDDLKILYVT PEKVSKSKRF
201: MSKLEKCHNA GRLSLISIDE AHCCSQWGHD FRPDYKNLSI LKTQFPKVPM VALTATATQK VQNDLIEMLH IPKCVKFVSS VNRPNLFYSV REKSLVGKAV
301: VDEIAEFIRE SYSNNESGIV YCFSRKECEQ IAGELRERGI SADYYHAEMD VNMREKVHMR WSKNKLQVIV GTVAFGMGIN KPDVRFVIHH SLSKSMETYY
401: QESGRAGRDG LPSECVLFFR SGDVPRQSSM VFYEYSGLQN LYDIVRYCQS KTKCRGSAFF RHFGEPSQDC NGMCDNCALS SEVKEVDVSD LAKLVVSMVQ
501: EMQAKDQRVT MLQLGDKLRT KHKDLSAELK REEIEHLVIK LIVDSVLKEE FQHTPYSTNA YVTTGPLANQ LLQGRKTIKT ETSSRQINKK SKRSSSFSGL
601: ESKLDELRKE ISAAHGSMLP HTVLSTQQIG LISSQKPDSL QELESIIGKL KTDKYGDKIL EVMRHDTVSE QLVEDGTKED TCKSRSSKRA KTQKNVVLLE
701: SSEEE

Best Arabidopsis Sequence Match ( AT1G31360.1 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEL ESIIGKLKTE KYGDRILEEV MRHEAVSEQL VEDPTKEETC KSRLRKRAKT QKDVVLVESS
701: GEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.