Factsheet for VIT_02s0087g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39703	Soybean	nucleus	72.56	77.99
Solyc08g074610.1.1	Tomato	nucleus	55.82	75.82
Os11t0708600-02	Rice	nucleus	52.74	75.33
HORVU0Hr1G008030.1	Barley	nucleus	34.67	72.35
Bra038422.1-P	Field mustard	nucleus	67.87	71.91
PGSC0003DMT400076140	Potato	cytosol, nucleus, plasma membrane	19.01	71.72
GSMUA_Achr4P27590_001	Banana	nucleus	68.27	71.53
KXG38755	Sorghum	nucleus	67.6	71.13
TraesCS4D01G133500.1	Wheat	nucleus	66.67	70.84
TraesCS4A01G178600.5	Wheat	nucleus	66.67	70.74
TraesCS4B01G138800.1	Wheat	nucleus	66.0	70.23
AT1G31360.3	Thale cress	nucleus	67.6	68.34
CDY12420	Canola	nucleus	68.01	61.35
Zm00001d030366_P007	Maize	nucleus	63.72	60.71
VIT_14s0060g01440.t01	Wine grape	nucleus	25.03	29.92
VIT_06s0004g08420.t01	Wine grape	nucleus	20.75	28.39
VIT_11s0016g00850.t01	Wine grape	nucleus	24.23	25.1
VIT_12s0035g00400.t01	Wine grape	nucleus	34.14	22.04
VIT_01s0010g02590.t01	Wine grape	mitochondrion	19.81	21.51

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	EntrezGene:100256266	wikigene:100256266	MapMan:15.3.3.5.3	Gene3D:3.40.50.300
ProteinID:CCB52255	ProteinID:CCB52255.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	UniProt:F6HJ58
EMBL:FN595769	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259
GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0043140	InterPro:HRDC_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR002121	InterPro:IPR014001	InterPro:IPR036388
EntrezGene:LOC100256266	wikigene:LOC100256266	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00570
PFAM:PF16124	PFscan:PS50967	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF72
InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI00015CD451
ArrayExpress:VIT_02s0087g00070	EnsemblPlantsGene:VIT_02s0087g00070	EnsemblPlants:VIT_02s0087g00070.t01	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002267000	RefSeq:XP_002267000.2
SEG:seg	:	:	:	:	:

Description

ATP-dependent DNA helicase [Source:UniProtKB/TrEMBL;Acc:F6HJ58]

Coordinates

chr2:-:17148051..17187066

Molecular Weight (calculated)

84141.9 Da

IEP (calculated)

7.328

GRAVY (calculated)

-0.460

Length

747 amino acids

Sequence
(BLAST)

001: MDSNYDLLEE LFNVELELQD VQDQIKNLLD RQEKLHERQS ELKTLLEACK GSGSPVKDGA SVAVENWSGP FDWDAQADDV RFNIFGISTY RANQREIINA
101: VMSGRDVLVI MAAGGGKSLC YQLPAILRDG VALVVSPLLS LIQDQVMGLA ALGIPAYMLT STTSKEDEKF IYKALEKGDG DLKILYVTPE KISKSKRFVS
201: KLEKCHHSGC LSLISIDEAH CCSQWGHDFR PDYKNLGILK TQFPDVPVVA LTATATKKVQ NDLMEMLHIP KCIKFVSTVN RPNLFYMVRE KSSVGRVVID
301: EIAEYIQESY PNNESGIVYC FSRKECEQVA KELRERGISA DYYHADMDVN ARERVHLRWS NSKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECLLYFRPG DVPRQSSMVF YENSGLQNLY DIVQYCQSKR ECRRNAFFRH FAEPLQDCNG MCDNCAFSTE VKEVDVSCLA KAMISLLQDM
501: QDNDQRLTML QMVDKMKVKN KDLGSDLRKE EIEHLVIQLI RDRVLKEEFQ HTAYATNAYV TLGLLWKQVS HGKRIVKLEI STKVKTKTGN MKSSKRSLTS
601: SGLELKLDEL RKELSSTHGG IFPHSVLSTQ QISILSAQKP TSILEAKTMI GKLKTEKYGS KILEEIAKYT ETEQPENVPP DDSTLGEGQG SEKKPTKRLK
701: TDEAQGSEKK PTKRLKTDEG QGSENRAPKR LKSNKAVVLI ESSGDET

Best Arabidopsis Sequence Match ( AT1G31360.1 )
(BLAST)

001: MESEAIQEDL QNLDVELKDV QGQISALIEH QDRLYERKSE LKTLLKALAA SGSPVASSGG SSAIENWSET FEWDSRADDV RFNVFGISKY RANQKEIINA
101: IMTGRDVLVI MAAGGGKSLC YQLPAMLRGG TTLVVSPLLS LIQDQVMGLA ALGISAYMLT STSGKENEKF VYKALEKGED DLKILYVTPE KVSKSKRFMS
201: KLEKCHNAGR LSLISIDEAH CCSQWGHDFR PDYKNLSILK TQFPKVPMVA LTATATQKVQ NDLIEMLHIP KCVKFVSSVN RPNLFYSVRE KSAVGKLVVD
301: EIAEFIRESY SNNESGIVYC FSRKECEQIA GDLRERGISA DYYHADMDAN MREKVHMRWS KNKLQVIVGT VAFGMGINKP DVRFVIHHSL SKSMETYYQE
401: SGRAGRDGLP SECILFFRSA DVPRQSSMVF YEYSGLQNLY DIVRYCQSKT KCRRSAFFRH FGEPSQDCNG MCDNCALSSE VKEVDVSDLS KLVVSMVQET
501: QAKDQRVTML QLGDKLRNKH KDLIAELKRD EVEHLVIKLI VDSVLKEEFQ HTPYSTNAYV TMGPLANQLL QGRKTIKMET SSRQTKKLKR SITFSGLELK
601: LDELRKEISA ADGSILPHTV LSTQQIGSIS SQKPVSLQEL ESIIGKLKTE KYGDRILEEV MRHEAVSEQL VEDPTKEETC KSRLRKRAKT QKDVVLVESS
701: GEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.