Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038422.1-P | Field mustard | nucleus | 87.14 | 91.35 |
| CDY12420 | Canola | nucleus | 87.82 | 78.38 |
| Os11t0708600-02 | Rice | nucleus | 52.64 | 74.38 |
| KRH39703 | Soybean | nucleus | 68.34 | 72.66 |
| Solyc08g074610.1.1 | Tomato | nucleus | 52.64 | 70.73 |
| PGSC0003DMT400076140 | Potato | cytosol, nucleus, plasma membrane | 18.4 | 68.69 |
| HORVU0Hr1G008030.1 | Barley | nucleus | 32.88 | 67.88 |
| VIT_02s0087g00070.t01 | Wine grape | nucleus | 68.34 | 67.6 |
| KXG38755 | Sorghum | nucleus | 63.6 | 66.2 |
| TraesCS4D01G133500.1 | Wheat | nucleus | 62.38 | 65.58 |
| TraesCS4A01G178600.5 | Wheat | nucleus | 62.38 | 65.48 |
| TraesCS4B01G138800.1 | Wheat | nucleus | 61.98 | 65.24 |
| GSMUA_Achr4P27590_001 | Banana | nucleus | 62.52 | 64.8 |
| Zm00001d030366_P007 | Maize | nucleus | 59.0 | 55.61 |
| AT3G05740.1 | Thale cress | nucleus | 24.36 | 29.7 |
| AT4G35740.1 | Thale cress | nucleus | 24.9 | 25.81 |
| AT1G10930.1 | Thale cress | nucleus | 35.18 | 21.89 |
| AT5G27680.2 | Thale cress | nucleus | 23.82 | 20.51 |
| AT1G27880.1 | Thale cress | nucleus | 20.97 | 17.01 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.150.80 | MapMan:15.3.3.5.3 | Gene3D:3.40.50.300 | EntrezGene:840026 | UniProt:A0A1P8AV94 |
| ProteinID:ANM60566.1 | ArrayExpress:AT1G31360 | EnsemblPlantsGene:AT1G31360 | RefSeq:AT1G31360 | TAIR:AT1G31360 | RefSeq:AT1G31360-TAIR-G |
| EnsemblPlants:AT1G31360.3 | Unigene:At.40359 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0006260 | GO:GO:0006281 | GO:GO:0006310 | GO:GO:0006950 | GO:GO:0008026 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 |
| GO:GO:0043140 | GO:GO:0044237 | InterPro:HRDC-like_sf | InterPro:HRDC_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR002121 | InterPro:IPR014001 | InterPro:IPR036388 | RefSeq:NP_174421.3 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00570 | PFAM:PF09382 | PFAM:PF16124 | PFscan:PS50967 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF72 | Symbol:RECQL2 | InterPro:RQC_domain |
| InterPro:RecQ_Zn-bd | SMART:SM00487 | SMART:SM00490 | SMART:SM00956 | SUPFAM:SSF47819 | SUPFAM:SSF52540 |
| TIGRFAMs:TIGR00614 | UniParc:UPI000848ED10 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
Coordinates
chr1:+:11232318..11237557
Molecular Weight (calculated)
83201.9 Da
IEP (calculated)
7.905
GRAVY (calculated)
-0.390
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MFCFTSCLGA VADFWERRRR RKGKHAAVDS AGESMESEAI QEDLQNLDVE LKDVQGQISA LIEHQDRLYE RKSELKTLLK ALAASGSPVA SSGGSSAIEN
101: WSETFEWDSR ADDVRFNVFG ISKYRANQKE IINAIMTGRD VLVIMAAGGG KSLCYQLPAM LRGGTTLVVS PLLSLIQDQV MGLAALGISA YMLTSTSGKE
201: NEKFVYKALE KGEDDLKILY VTPEKVSKSK RFMSKLEKCH NAGRLSLISI DEAHCCSQWG HDFRPDYKNL SILKTQFPKV PMVALTATAT QKVQNDLIEM
301: LHIPKCVKFV SSVNRPNLFY SVREKSAVGK LVVDEIAEFI RESYSNNESG IVYCFSRKEC EQIAGDLRER GISADYYHAD MDANMREKVH MRWSKNKLQV
401: IVGTVAFGMG INKPDVRFVI HHSLSKSMET YYQESGRAGR DGLPSECILF FRSADVPRQS SMVFYEYSGL QNLYDIVRYC QSKTKCRRSA FFRHFGEPSQ
501: DCNGMCDNCA LSSEVKEVDV SDLSKLVVSM VQETQAKDQR VTMLQLGDKL RNKHKDLIAE LKRDEVEHLV IKLIVDSVLK EEFQHTPYST NAYVTMGPLA
601: NQLLQGRKTI KMETSSRQTK KLKRSITFSG LELKLDELRK EISAADGSIL PHTVLSTQQI GSISSQKPVS LQELESIIGK LKTEKYGDRI LEEVMRHEAV
701: SEQLVEDPTK EETCKSRLRK RAKTQKDVVL VESSGEEEA
101: WSETFEWDSR ADDVRFNVFG ISKYRANQKE IINAIMTGRD VLVIMAAGGG KSLCYQLPAM LRGGTTLVVS PLLSLIQDQV MGLAALGISA YMLTSTSGKE
201: NEKFVYKALE KGEDDLKILY VTPEKVSKSK RFMSKLEKCH NAGRLSLISI DEAHCCSQWG HDFRPDYKNL SILKTQFPKV PMVALTATAT QKVQNDLIEM
301: LHIPKCVKFV SSVNRPNLFY SVREKSAVGK LVVDEIAEFI RESYSNNESG IVYCFSRKEC EQIAGDLRER GISADYYHAD MDANMREKVH MRWSKNKLQV
401: IVGTVAFGMG INKPDVRFVI HHSLSKSMET YYQESGRAGR DGLPSECILF FRSADVPRQS SMVFYEYSGL QNLYDIVRYC QSKTKCRRSA FFRHFGEPSQ
501: DCNGMCDNCA LSSEVKEVDV SDLSKLVVSM VQETQAKDQR VTMLQLGDKL RNKHKDLIAE LKRDEVEHLV IKLIVDSVLK EEFQHTPYST NAYVTMGPLA
601: NQLLQGRKTI KMETSSRQTK KLKRSITFSG LELKLDELRK EISAADGSIL PHTVLSTQQI GSISSQKPVS LQELESIIGK LKTEKYGDRI LEEVMRHEAV
701: SEQLVEDPTK EETCKSRLRK RAKTQKDVVL VESSGEEEA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.