Factsheet for AT1G27880.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03955	Canola	nucleus	84.96	84.04
Bra030065.1-P	Field mustard	nucleus	84.96	79.63
CDY15702	Canola	nucleus	84.96	79.63
VIT_01s0010g02590.t01	Wine grape	mitochondrion	50.05	66.28
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	30.3	56.67
KRH42637	Soybean	nucleus	54.56	54.98
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	11.31	50.99
Solyc05g014690.1.1	Tomato	nucleus	54.67	49.7
Os04t0486800-01	Rice	nucleus	50.38	49.57
OQU81827	Sorghum	cytosol, extracellular	9.66	49.16
TraesCS2B01G363700.1	Wheat	nucleus	49.62	48.71
Zm00001d025722_P002	Maize	nucleus	49.07	48.17
TraesCS2A01G345300.1	Wheat	nucleus	49.18	48.07
TraesCS2D01G344000.2	Wheat	nucleus	49.4	47.92
EES12342	Sorghum	plastid	49.29	46.48
HORVU2Hr1G084110.2	Barley	plastid	48.08	46.15
AT3G05740.1	Thale cress	nucleus	16.36	24.59
AT4G35740.1	Thale cress	nucleus	16.9	21.6
AT1G31360.3	Thale cress	nucleus	17.01	20.97
AT5G27680.2	Thale cress	nucleus	16.03	17.02
AT1G10930.1	Thale cress	nucleus	19.1	14.65

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:839681	ProteinID:AAG50580.1	ProteinID:AEE30887.1	EMBL:AJ421618
EMBL:AK226619	ArrayExpress:AT1G27880	EnsemblPlantsGene:AT1G27880	RefSeq:AT1G27880	TAIR:AT1G27880	RefSeq:AT1G27880-TAIR-G
EnsemblPlants:AT1G27880.1	TAIR:AT1G27880.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006260	GO:GO:0006284
GO:GO:0006310	GO:GO:0006950	GO:GO:0007154	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009378	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0009991
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0042631	GO:GO:0043140	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	RefSeq:NP_174109.2	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009052	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF108
UniProt:Q0WVW7	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0000196EDC
SEG:seg	:	:	:	:	:

Description

RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]

Coordinates

chr1:+:9708861..9714366

Molecular Weight (calculated)

100760.0 Da

IEP (calculated)

8.979

GRAVY (calculated)

-0.209

Length

911 amino acids

Sequence
(BLAST)

001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.