Factsheet for HORVU2Hr1G084110.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G363700.1	Wheat	nucleus	84.51	86.42
TraesCS2A01G345300.1	Wheat	nucleus	84.19	85.73
TraesCS2D01G344000.2	Wheat	nucleus	84.4	85.3
Os04t0486800-01	Rice	nucleus	71.97	73.76
Zm00001d025722_P002	Maize	nucleus	69.02	70.58
EES12342	Sorghum	plastid	70.39	69.15
OQU81827	Sorghum	cytosol, extracellular	12.54	66.48
VIT_01s0010g02590.t01	Wine grape	mitochondrion	44.47	61.34
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	31.3	60.99
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	12.33	57.92
KRH58739	Soybean	cytosol	10.43	56.9
KRH42637	Soybean	nucleus	47.52	49.89
AT1G27880.1	Thale cress	nucleus	46.15	48.08
CDY03955	Canola	nucleus	46.15	47.56
Solyc05g014690.1.1	Tomato	nucleus	48.16	45.61
Bra030065.1-P	Field mustard	nucleus	46.68	45.58
CDY15702	Canola	nucleus	46.68	45.58
HORVU0Hr1G002110.1	Barley	vacuole	5.58	39.26
HORVU0Hr1G008030.1	Barley	nucleus	9.59	25.42
HORVU4Hr1G032190.1	Barley	nucleus	16.23	24.02
HORVU1Hr1G021560.16	Barley	nucleus	15.49	17.38
HORVU2Hr1G075870.8	Barley	nucleus, plastid	7.8	11.9
CDX97959	Canola	nucleus	1.26	4.49
CDX89177	Canola	nucleus	1.26	4.49
Solyc09g018690.2.1	Tomato	nucleus	2.32	4.34

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287IPQ9	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0007154	GO:GO:0008026
GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0009991
GO:GO:0016787	GO:GO:0042631	EnsemblPlantsGene:HORVU2Hr1G084110	EnsemblPlants:HORVU2Hr1G084110.2	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00690
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF108	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000B47404B	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:+:610172439..610184745

Molecular Weight (calculated)

105738.0 Da

IEP (calculated)

9.272

GRAVY (calculated)

-0.379

Length

949 amino acids

Sequence
(BLAST)

001: LGGKSPQISL QFFDSVPHLQ PTAPHHQFRH QRCTLRSTPP TPTPTTPSSP TYPPPRLAGA RQHLALHRPS TVPRQIPHQN PNASPNQSPS PYPALPPPPP
101: PPPRLRSAPP PXLVQSRNLS FEPSAAFTNP APAPEFEPEP EPAGGNPISK PEPVEIPSAE PAEIPSAEPS PPPPPAITHP PPQLRPKRVH PNSVSEAPTA
201: AAEQPKRPRG DPAGNFVRLN INGHGRKKSF KSQARRPTKY RSWKRQQPGG GKPRTGADEE GDFVAEALLE REKNAAAGDD GVFKTVEVAR EDPSEQNLEI
301: LLRKVFGYDS FRQGQLEAIQ NVVAGESTVL VLPTGAGKSL CYQLPAMILP GLTLVVSPLL SLMVDQLRKL PAFLPGGLLA SSQTSDEFHG TLRLLRAGEM
401: KVLFVSPERF LNEEFLKIFR DTLPISLVVI DEAHCISEWS HNFRPSYLRL RASLLRRKLN IQCILAMTAT ATTQTLQEIV NVLEIPSGNL IQTSQIRENL
501: KLSISLSDNR LKDLLLLLKS PPFVNMRSII VYCKFQTETD YVCKHLCDNN INAKSYHSGL LMKKRSRVQE LFCSNKIRVV VATVAFGMGL DKSDVEGVIH
601: YRLPESLEEY IQETGRAGRD GRLSHCHLLF DSTTFYKIRS LSHSDGIDEY AMSKFLNQIF SSGNTIGCIC SFPKESTSRK FDIKEEVLLT VLTQLEIGEE
701: KYLHLLPQFS VTCTLYFHKT SPQLLADKNI LLRSILNKSE MKDGSYVFEI PRVANDMRIT MNEVFDRLQK LKFSGELSYE LKDPAYCYMI LKRPHDLNAL
801: SANLTKWLSE VENSKIRKLD AMFALADYAV KGCKKTDGCS GSEHTPCIQK RIINYFSKKE GTPDDDYCTP LRKSSTFLQS DIKVFLQSNS FAKFTPRAVA
901: RIMHGISSPS FPAATWSKNH FWGRYMEVDF PVVIQAAKAE LVKFVGKGE

Best Arabidopsis Sequence Match ( AT1G10930.1 )
(BLAST)

0001: MINSNQMSRS HLPEVQKPRG PQTNWSEHAK ALESSSSVTK FLSSNVLYAL ESQKPRDMAA RSIAFPSVNV HTLAHPQISK AWRALSSLSV NNTYLRPGVT
0101: PPIDVGTNDS YSARERSTAK VISSTGGSVY SSTRPNLSAM NVSGTGRSFH SFPSSVPGDD KIVAEKFPRG NNEIRESEPS CTHLNGVEKS FGNSAFPAEQ
0201: FESRKACLDD MDDDDILENI DVDQIVMEHY HSTSTPQPSV SNFSLRTPPV DRSASRLEEE CNLPPELCSN CSHGIKLGLC PEASTHVEQM KDVLLAISNE
0301: LLDDATDLSP DRVGQLRQER LRLKKQIQQL ENHIRDKESQ KSQFLSSTAT RIFQYETPKS TNYKMDQPQT DFRAHVSDQG RYACDSWNTP RDSSFSVDRY
0401: GLSSAPVERE QYVPKIIDVT YTEGSNDKKW SSREFPWTRK LEVNNKKVFG NHSFRPNQRE IINATMSGSD VFVLMPTGGG KSLTYQLPAL ICGGITLVIS
0501: PLVSLIQDQI MNLLQANIPA ASLSAGMEWA EQLKIFQELN SEHSKYKLLY VTPEKVAKSD SLLRHLENLN SRGLLARFVI DEAHCVSQWG HDFRPDYQSL
0601: GILKQKFPNI PVLALTATAT ASVKEDVVQA LGLVNCVVFR QSFNRPNLWY SVVPKTKKCL EDIDKFIKEN HFDECGIIYC LSRMDCEKVS ERLQEFGHKA
0701: AFYHGSMEPE QRAFIQTQWS KDEINIICAT VAFGMGINKP DVRFVIHHSL PKSIEGYHQE CGRAGRDGQR SSCVLYYGYG DYIRVKHMIS QGGVDQSPMA
0801: TGYNRVASSG RLLETNTENL LRMVRYCENE VECRRFLQLV HLGEKFDSTN CKKTCDNCCS SQSLIDKDVT LITRQLVELV KQTGERFSSA HILEVYRGSL
0901: NQMVKKHRHE TLQFHGAGKH LSKIEVSRIL HYLVTEDILV EDVRKSDMYG SVSSLLQVNN AKATILFSGS QTIVMKFPSS VKVLKPSKQG ATAAKGPLTS
1001: EKQSTLPLTT EDAPPKDVNL SANMYTALRK LRTALVKEAP DGVMAYHIFI NSTLQQISRR IPRTKEELLE INGLGKAKVS KYGDQLLETI ETTVNEYYGT
1101: NKKDSIISND SPDSGKRRRD ENISPNVAED DDFEVSPSQS CKKTVRNKSN EVLHGECIDG DRRGMELDFD FKDEDGSEIR PEGRVLPW

Arabidopsis Description

RECQL4AATP-dependent DNA helicase Q-like 4A [Source:UniProtKB/Swiss-Prot;Acc:Q8L840]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.