Factsheet for TraesCS2D01G344000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G363700.1	Wheat	nucleus	96.59	97.74
TraesCS2A01G345300.1	Wheat	nucleus	96.7	97.42
HORVU2Hr1G084110.2	Barley	plastid	85.3	84.4
Os04t0486800-01	Rice	nucleus	78.7	79.81
Zm00001d025722_P002	Maize	nucleus	74.97	75.86
EES12342	Sorghum	plastid	76.78	74.64
OQU81827	Sorghum	cytosol, extracellular	12.46	65.36
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	32.06	61.81
VIT_01s0010g02590.t01	Wine grape	mitochondrion	45.26	61.77
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	12.78	59.41
KRH58739	Soybean	cytosol	10.86	58.62
KRH42637	Soybean	nucleus	50.27	52.21
AT1G27880.1	Thale cress	nucleus	47.92	49.4
CDY03955	Canola	nucleus	48.35	49.29
Solyc05g014690.1.1	Tomato	nucleus	50.91	47.7
Bra030065.1-P	Field mustard	nucleus	48.99	47.33
CDY15702	Canola	nucleus	48.99	47.33
TraesCS4D01G144400.2	Wheat	nucleus	17.04	25.76
TraesCS4D01G133500.1	Wheat	nucleus	16.72	22.33
TraesCS6D01G320500.1	Wheat	nucleus	15.65	18.99
TraesCS1D01G100000.1	Wheat	nucleus	16.08	17.85
TraesCS2D01G102800.1	Wheat	nucleus	16.08	16.91
TraesCS2D01G303500.1	Wheat	nucleus	19.06	14.9
Solyc09g018690.2.1	Tomato	nucleus	2.56	4.73
CDX97959	Canola	nucleus	1.17	4.12
CDX89177	Canola	nucleus	1.17	4.12

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006310	GO:GO:0006950	GO:GO:0007154	GO:GO:0008026	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009628	GO:GO:0009987	GO:GO:0009991	GO:GO:0016787
GO:GO:0042631	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710
PANTHER:PTHR13710:SF108	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	EnsemblPlantsGene:TraesCS2D01G344000
EnsemblPlants:TraesCS2D01G344000.2	TIGR:cd00046	TIGR:cd00079	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:+:440310496..440319358

Molecular Weight (calculated)

103915.0 Da

IEP (calculated)

8.781

GRAVY (calculated)

-0.319

Length

939 amino acids

Sequence
(BLAST)

001: MYSSLHAADS DSDDSLLSDV SASPTRRCSP APRPAPPKHR PTPDPTSKPK RKPKPKPKPV PSSTSAPASA SASASAPPIR AAALSDPHGL AARIAPGSAL
101: TASASTVSFS SFRRLVQSRN LSFEPAAAFS NPAPAPELEP EPESEPAEIP SAEPSPPPAA THPPPQLRPK RVHPNSVSEA PAAAAEQPKR PRGDPGNFVR
201: LNINGYGRKK SFKSQARRPT KYRSWKRQQP GGGKPRAGAD EEGDFVAEAL LEREKNSAAG DDGVLKVVEV AREDPSEQNL EGLLRKVFGY DSFREGQLEA
301: IQNVVAGEST VLVLPTGAGK SLCYQLPAMI LPGLTLVVSP LLSLMVDQLR KLPAFLPGGL LASSQTSDEF HGTLRLLRAG EIKVLFVSPE RFLNEEFLQI
401: LGDTLPISLV VIDEAHCISE WSHNFRPSYL RLRASLLRRK LNIQCILAMT ATATTQTLQE IVNALEIPSG NLIQTSQIRE NLKLSISMSD NRLKDLMLLL
501: KSPPFVNMRS IIVYCKFQTE TDYVCKHLCD NNINAKSYHS GLLMKKRSRV QELFCSNKIR VVVATVAFGM GLDKSDVEGV IHYRLPESLE EYIQETGRAG
601: RDGRLSHCHL LFDSTTFYKI RSLSHSDGID EYAMSKFLNQ IFSSGNTMGC ICSFPKESTS RKFDIKEEVL LTVLTQLEIG EEQYLHLLPQ FSVTCTLYFH
701: KTSPQLLADK DILLRSILNK SEMKDGSYVF EVPRVANDMR ITMNEVFDRL QKLKFSGELS YELKDPAYCY MILKRPDDLN ALSANLTKWL SEVENSKIRK
801: LDAMFALAYY AVKGCKKTDG CSGSEHTPCI QKRIIDYFSK KEGTPDDDYC TPLRKSRTFD FASCSTFLQS DIKVFLQSNS FAKFTPRAVA RIMHGISSPA
901: FPAATWAKNH FWGRYMEVDF PVVIEAAKAE LVKFVGKGE

Best Arabidopsis Sequence Match ( AT1G27880.1 )
(BLAST)

001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T

Arabidopsis Description

RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.