Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
OQU81827 | Sorghum | cytosol, extracellular | 19.51 | 53.07 |
VIT_01s0010g02590.t01 | Wine grape | mitochondrion | 60.78 | 43.02 |
Zm00001d025722_P002 | Maize | nucleus | 62.63 | 32.87 |
Os04t0486800-01 | Rice | nucleus | 61.81 | 32.51 |
TraesCS2B01G363700.1 | Wheat | nucleus | 61.81 | 32.44 |
TraesCS2A01G345300.1 | Wheat | nucleus | 62.01 | 32.4 |
TraesCS2D01G344000.2 | Wheat | nucleus | 61.81 | 32.06 |
EES12342 | Sorghum | plastid | 63.45 | 31.99 |
HORVU2Hr1G084110.2 | Barley | plastid | 60.99 | 31.3 |
GSMUA_AchrUn_... | Banana | nucleus | 26.9 | 31.19 |
KRH42637 | Soybean | nucleus | 57.49 | 30.97 |
AT1G27880.1 | Thale cress | nucleus | 56.67 | 30.3 |
CDY03955 | Canola | nucleus | 56.88 | 30.08 |
CDY15702 | Canola | nucleus | 57.91 | 29.01 |
Bra030065.1-P | Field mustard | nucleus | 57.91 | 29.01 |
Solyc05g014690.1.1 | Tomato | nucleus | 58.73 | 28.54 |
GSMUA_Achr4P27590_001 | Banana | nucleus | 26.28 | 17.95 |
GSMUA_Achr3P10310_001 | Banana | endoplasmic reticulum, nucleus, plasma membrane | 26.28 | 16.56 |
GSMUA_Achr8P06700_001 | Banana | nucleus | 20.12 | 12.25 |
GSMUA_Achr6P17780_001 | Banana | nucleus | 27.93 | 11.46 |
GSMUA_Achr10P... | Banana | nucleus | 19.51 | 10.2 |
KRH58739 | Soybean | cytosol | 0.62 | 1.72 |
GSMUA_Achr6P28400_001 | Banana | cytosol, plastid | 0.62 | 1.49 |
Solyc09g018690.2.1 | Tomato | nucleus | 1.23 | 1.18 |
CDX97959 | Canola | nucleus | 0.0 | 0.0 |
CDX89177 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 |
GO:GO:0006259 | GO:GO:0006310 | GO:GO:0008026 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr6G28390_001 | EnsemblPlants:GSMUA_Achr6P28390_001 | EnsemblPlants:GSMUA_Achr6T28390_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M0TAY4 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF108 | SMART:SM00487 |
SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 | UniParc:UPI000294C267 | SEG:seg | : |
Description
ATP-dependent DNA helicase Q-like 5 [Source:GMGC_GENE;Acc:GSMUA_Achr6G28390_001]
Coordinates
chr6:+:28755049..28761267
Molecular Weight (calculated)
54668.6 Da
IEP (calculated)
6.508
GRAVY (calculated)
0.022
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVAREDPSD ENLQRLLKLT HGYGSFREGQ LEAIKRVLAG ESTMLMLPTG AGKSLCYELP ALILPGVTLV VSPLMALMVD QLRKLPSSIP GGLLSSTQTN
101: DEASETLRRL HEGNVKVLFV SPERFLSADF LSIFGNELSI SLLVIDEAHC ISEWSHNFRP SYLRLRASIL QRKLGVQCIL AMTATATTQT FHDIMCALEI
201: PHANVIKMCR VRENLQLFVT MSENRQLDVK EILDLLTSKD KKTFPLMKMI DSTMIVAVVD YKSSAMTYGL IDLQHEENIT AEKFIPDNKK VSVVVCYEKL
301: TTETDMVSKF LCDNNIPAKA YHSGIPAKNR VRTQELFCSN KIRVVVATVA FGMGLDKSDV QAVIHYSMPA SLEEYIQETG RAGRDGKLSY CHLFLDITTY
401: HKLHSLSYSD GVDEYSVSKF LSQVFSSDVH LTGQTCSLVK ESMSRKFDMK EEVLLTILTQ LEIGDEQYLS LLPLLNVTCS LYFHKVF
101: DEASETLRRL HEGNVKVLFV SPERFLSADF LSIFGNELSI SLLVIDEAHC ISEWSHNFRP SYLRLRASIL QRKLGVQCIL AMTATATTQT FHDIMCALEI
201: PHANVIKMCR VRENLQLFVT MSENRQLDVK EILDLLTSKD KKTFPLMKMI DSTMIVAVVD YKSSAMTYGL IDLQHEENIT AEKFIPDNKK VSVVVCYEKL
301: TTETDMVSKF LCDNNIPAKA YHSGIPAKNR VRTQELFCSN KIRVVVATVA FGMGLDKSDV QAVIHYSMPA SLEEYIQETG RAGRDGKLSY CHLFLDITTY
401: HKLHSLSYSD GVDEYSVSKF LSQVFSSDVH LTGQTCSLVK ESMSRKFDMK EEVLLTILTQ LEIGDEQYLS LLPLLNVTCS LYFHKVF
001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T
Arabidopsis Description
RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.