Factsheet for GSMUA_Achr10P10760_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g08420.t01	Wine grape	nucleus	38.13	65.02
HORVU0Hr1G002110.1	Barley	vacuole	8.27	57.04
Solyc09g018710.2.1	Tomato	cytosol	24.92	56.59
EER97745	Sorghum	nucleus	52.2	53.94
Os07t0681600-01	Rice	nucleus	50.48	53.05
TraesCS2A01G103300.1	Wheat	nucleus	50.27	52.41
TraesCS2D01G102800.1	Wheat	nucleus	50.27	52.41
TraesCS2B01G120600.1	Wheat	nucleus	50.05	52.18
KRH30702	Soybean	nucleus	48.12	51.44
KRG98073	Soybean	nucleus	50.27	50.87
GSMUA_AchrUn_...	Banana	nucleus	12.67	28.1
GSMUA_Achr4P27590_001	Banana	nucleus	17.94	23.42
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	16.54	19.92
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	10.2	19.51
GSMUA_Achr8P06700_001	Banana	nucleus	16.65	19.38
GSMUA_Achr6P17780_001	Banana	nucleus	19.01	14.91
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	2.58	11.88

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.150.80	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006260	GO:GO:0006281	GO:GO:0006310	GO:GO:0006950	GO:GO:0008026	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0032508
GO:GO:0043140	GO:GO:0044237	EnsemblPlantsGene:GSMUA_Achr10G10760_001	EnsemblPlants:GSMUA_Achr10P10760_001	EnsemblPlants:GSMUA_Achr10T10760_001	InterPro:HRDC-like_sf
InterPro:HRDC_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:Helicase_HTH	InterPro:IPR001650	InterPro:IPR002121
InterPro:IPR014001	InterPro:IPR036388	UniProt:M0RH52	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF00570
PFAM:PF09382	PFAM:PF14493	PFAM:PF16124	PFscan:PS50967	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR13710	PANTHER:PTHR13710:SF120	InterPro:RQC_domain	InterPro:RecQ_Zn-bd	SMART:SM00341	SMART:SM00490
SMART:SM00956	SUPFAM:SSF47819	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0002960AB3	InterPro:WH-like_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

Putative Probable ATP-dependent DNA helicase recQ [Source:GMGC_GENE;Acc:GSMUA_Achr10G10760_001]

Coordinates

chr10:-:20444619..20462883

Molecular Weight (calculated)

104775.0 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.249

Length

931 amino acids

Sequence
(BLAST)

001: MSLKQRGIKA EYLGSTQTDK TVHFHAESGT YDVLFMTPEK ACSLTSRFWA NLLNMGICLL AVDEAHCISE WGHDFRKEYK QLNMLRGVLS GVPFVALTAT
101: ATEKHVSRDL MVEMPVILTS CSFLYFTLIY DNCWQQTIYS TSSQGKKVLV YNDNKLQVPI SCGIGLLRKV TFGRTGKAIM YNGTFLEYSE QLIYFVNFVA
201: YAAVQQVRND IICSLNMNET FIAVGSFDRQ NLFYGVKSFN RSLSFVDELV QEVSKYINSA GSTIIYCTTV KDTEQIYESL QNAGIKAGIY HGQMGSSDRE
301: KTHRSFIKDE LQILVATIAF GMGIDKPNVR CIIHYGCPKS LESYYQESGR CGRDGLPSVC WLYYSRSDFT KADFYCAEAH SESQRKAIME SLRAAEKYCF
401: LATCRRKFLL QYFGETNNDD CGNCDNCTHA RRQRDLSREC FLLLSCIRSC GGRWGINMPI DILRGSRSKK IVGNNFDTLP LHGLGKDYSS TWWKALAAQL
501: IANGYLKENL VDVYRTVSIS PMGLQFLSSA STIHHRPLVL ALTSEMADEE EHGSQKNKLG DLQNPAVLAC EGLSEAESKL FFMLLDIRLD LANRYGTAPY
601: AICGDETIKR LAKMRPCNRA RLANIDGINQ HFVTRYGDEF LTSISKFSQE LNLQTDYEGT AQTATIRKVG ANIEKRATPA KLEAWRLWQH DGLSFQKIAE
701: IPRNSGPIKE QTVISYVLDA AREGCELNWS RFCKETGLTL EIVSQIHCAI TSVGSRCKLK PIKEELPESV SYDNIKTCLT MDELGLSAEE IIGCNSVYEA
801: PNKIMESPSH CPFKNVIRNR AASSTIASES APTSPYHCET HLKQSRSDDA LDLESSARKL PKICENTQHC TGDLVATENA VLEWVRDHDG VSLLDIVEHF
901: KGSKEESVLD LLNHLEGEFV IFKRNDLYKV M

Best Arabidopsis Sequence Match ( AT1G31360.2 )
(BLAST)

001: MLRGGTTLVV SPLLSLIQDQ VMGLAALGIS AYMLTSTSGK ENEKFVYKAL EKGEDDLKIL YVTPEKVSKS KRFMSKLEKC HNAGRLSLIS IDEAHCCSQW
101: GHDFRPDYKN LSILKTQFPK VPMVALTATA TQKVQNDLIE MLHIPKCVKF VSSVNRPNLF YSVREKSAVG KLVVDEIAEF IRESYSNNES GIVYCFSRKE
201: CEQIAGDLRE RGISADYYHA DMDANMREKV HMRWSKNKLQ VIVGTVAFGM GINKPDVRFV IHHSLSKSME TYYQESGRAG RDGLPSECIL FFRSADVPRQ
301: SSMVFYEYSG LQNLYDIVRY CQSKTKCRRS AFFRHFGEPS QDCNGMCDNC ALSSEVKEVD VSDLSKLVVS MVQETQAKDQ RVTMLQLGDK LRNKHKDLIA
401: ELKRDEVEHL VIKLIVDSVL KEEFQHTPYS TNAYVTMGPL ANQLLQGRKT IKMETSSRQT KKLKRSITFS GLELKLDELR KEISAADGSI LPHTVLSTQQ
501: IGSISSQKPV SLQELESIIG KLKTEKYGDR ILEEVMRHEA VSEQLVEDPT KEETCKSRLR KRAKTQKDVV LVESSGEEEA

Arabidopsis Description

RECQL2RECQ helicase L2 [Source:TAIR;Acc:AT1G31360]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.