Factsheet for GSMUA_Achr3P10310_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0780800-01	Rice	cytosol	31.18	74.84
CDY41637	Canola	nucleus	30.27	70.06
VIT_11s0016g00850.t01	Wine grape	nucleus	56.02	60.06
KXG31219	Sorghum	nucleus	56.14	57.71
AT4G35740.1	Thale cress	nucleus	52.26	56.66
KRH37506	Soybean	nucleus	54.46	56.59
TraesCS6B01G371000.2	Wheat	nucleus	55.63	56.5
Bra010520.1-P	Field mustard	nucleus	52.01	56.07
CDY64039	Canola	nucleus	52.01	56.07
Zm00001d018287_P001	Maize	nucleus	53.3	55.9
TraesCS6A01G339900.1	Wheat	nucleus	54.98	55.77
TraesCS6D01G320500.1	Wheat	nucleus	55.24	55.17
Solyc07g042010.2.1	Tomato	nucleus	48.64	54.89
GSMUA_AchrUn_...	Banana	nucleus	23.16	42.62
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	16.56	26.28
GSMUA_Achr4P27590_001	Banana	nucleus	22.77	24.68
GSMUA_Achr8P06700_001	Banana	nucleus	17.59	17.0
GSMUA_Achr6P17780_001	Banana	nucleus	25.74	16.77
GSMUA_Achr10P...	Banana	nucleus	19.92	16.54
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	2.46	9.41

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0000733
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006310	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0036310	GO:GO:0043138	EnsemblPlantsGene:GSMUA_Achr3G10310_001
EnsemblPlants:GSMUA_Achr3P10310_001	EnsemblPlants:GSMUA_Achr3T10310_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
UniProt:M0SDE8	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF16124	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105	InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000295ACF9	SEG:seg	:	:

Description

ATP-dependent DNA helicase Q-like 3 [Source:GMGC_GENE;Acc:GSMUA_Achr3G10310_001]

Coordinates

chr3:-:7448155..7465739

Molecular Weight (calculated)

86620.5 Da

IEP (calculated)

8.459

GRAVY (calculated)

-0.349

Length

773 amino acids

Sequence
(BLAST)

001: MFNLIYFVHL VMKKSILPVK NEKGSGTKIL AKEDLQKLLK HYFGYSEFRG KQLQAINAVL SGRDCFCLMP TGGGKSMCYQ IPAVAKLGIV LVISPLIGKC
101: YMSENQVETL RKKGIPAEFL SSTQAVHVKQ KIHEDLNSGK PSLRLLYVTP ELVATVSFMA KLTKLYDRGL LSLFAVDEAH CISSWGHDFR PSFRKLSSLR
201: SHFPGVPILA LTATAVPKVQ KDVISSLCLH QPLVLSASFN RPNIYYEVRY KDLLKDTYAD LLNLLKSSGN VCSIVYCHER STCDDLSSHL SKHGISSAVY
301: HAGLSSKLRS TVLDDWLSSK IEVVVATVAF GFCIQTISYF TENLSSHHFV YCVCCGCLLG IDRKDVRIVC HFNIPKSMEA FYQESGRAGR DQSSSRSILY
401: YGLDDCKRME FILSNAIGKN NECSSSSNGL SEKSLAAFNQ MVEYCEGSGC RRKKILESFG EQISTSLCQK TCDSCKHPNL VVQKLEDLQR IHYSHKKARL
501: FPIFIKSTTY GTSEGQSTEF WNRENEDSYL GEEISNSEDE ADDASNMTRS KMPTDAALDE KFKILQHAEE LYFRSKGPSK QGSSDKKTIT DTLRKESTKR
601: FLNALKQTKE RLRKLPIDCE ASAAFLEMEC FKKYEKVGKT FYISQVAATV RWLSNSSFEQ IYDRLSDEST QTSSSYGQDD LPSGTDSALL QDGITTDAVH
701: KENQLNSNAL VENFNCSLEM KNPSEKIDLL PIPSFSEFVN GKGRAQSSGS SNITTSESRK HMGKNPEKRI RLK

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.