Factsheet for Os02t0780800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41637	Canola	nucleus	69.57	67.07
Zm00001d018287_P001	Maize	nucleus	88.2	38.53
KXG31219	Sorghum	nucleus	89.13	38.16
TraesCS6B01G371000.2	Wheat	nucleus	88.51	37.45
TraesCS6A01G339900.1	Wheat	nucleus	88.51	37.4
TraesCS6D01G320500.1	Wheat	nucleus	88.82	36.95
VIT_11s0016g00850.t01	Wine grape	nucleus	71.74	32.04
AT4G35740.1	Thale cress	nucleus	70.5	31.84
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	74.84	31.18
Bra010520.1-P	Field mustard	nucleus	68.94	30.96
CDY64039	Canola	nucleus	68.94	30.96
KRH37506	Soybean	nucleus	70.5	30.51
Solyc07g042010.2.1	Tomato	nucleus	61.18	28.76
Os11t0708600-02	Rice	nucleus	40.99	25.24
Os11t0672700-01	Rice	nucleus	42.24	23.13
Os05t0150600-02	Rice	nucleus	36.96	14.1
Os07t0681600-01	Rice	nucleus	37.27	13.54
Os04t0486800-01	Rice	nucleus	34.78	12.1
Os04t0433800-01	Rice	nucleus	40.06	10.66

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0P0VQJ4	ProteinID:BAS81218.1	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ
GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310
GO:GO:0006950	GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009378	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0036310	GO:GO:0043138	GO:GO:0043140
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlantsGene:Os02g0780800	EnsemblPlants:Os02t0780800-01
InterPro:P-loop_NTPase	PFAM:PF00270	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105
SMART:SM00487	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI000393B770	SEG:seg	:

Description

Hypothetical conserved gene. (Os02t0780800-01)

Coordinates

chr2:-:33084470..33093837

Molecular Weight (calculated)

35242.7 Da

IEP (calculated)

9.424

GRAVY (calculated)

-0.047

Length

322 amino acids

Sequence
(BLAST)

001: MKRQLPIKGA SGASGSGHGK KAPQELENVL KQHFGYSGFR GKQLEAIEAV LSGRDCFCLM PTGGGKSMCY QIPALVKSGI VLVISPLIAL MENQVASLKS
101: KGIPAEFLSS TQTSHNKQKI HEDLDSGNPS LKLLYVTPEL VATSGFKAKL TKLYNRGLLG LVAIDEAHCI STWGHDFRPS YRKLSSLRNQ FPDIPILALT
201: ATAVPKVQKD VISSLCLRNP LILRASFNRP NIFYEVRYKD LLDDVYSDIS NLLKSSGNVC SIVYCLERAV CDDLTMHLSQ QGISSAAYHA GLNSKVRSSV
301: LDDWLSSRTQ VVVATVAFGY RY

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.